Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03199 ATGAGAGATGAGGGCCCTGAAAGAGAGAATGTGGTCGATGAGGCAATCAAAGACCCTCAAGATCTGCGCCAATCATCTCAGGAGGTTGTTTTTGTATTACTTGCATTCGAAAGTATATTTTCCTCTTTCTCCTCTATTTTCGCTGATGCTGATGCTGAAGAAAATGCACAGGCTGCAGAAATTGAAAGAAGAATAGAGTTAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTCTACTGCTAGGTGCTGGAGAGTCAGGGATGTCTACTATCTTTAAGTGGGCAAGAAGTTGCATTTTCTCAACATCTTGGGATGGTATACTTGTCAGATTTGTTTTGAGTACAGATCTGCCAATTGATAGAAAAGCTTCACTTCAGCAATTCCTAGAGAAGAGAAAGGGGAGAAGACTTGTTTTGTTTTACTTCTCCCTATTTTCTCTCTCCAGCAAGCTCAGAATCTCACTCAACCAATGCTCTGAATTTTCATACATTGTACTATTCTCTTTGGTCTTCTCTTCCTTTTCTTTGAAGGAAAGTGAAACTATTGGTGTATCTTTCTCAATTTACATTTCAAGTGAAAGAGAAAGGATGTCAAGTGGAGCAACATATTGGTGTTATACATGCAGGCAGCCAATTTTTCTTGCAGTTGGGGATTCCATTTGCCCTTACTGTGATGGAGGCTTTGTGCAAGAACTTGATGAGATGCGAGGAATTGCACCTCAACATGGCTATTCATCACAAATGGAAGAGTTTCATCAAATGCCTGACATTTTTGATGCTATACATGCTGTTGTAAGTCAAAGAGGTTCTGTACCAAGAAATGGGCTAAGAGATGCTGTTGATAGTTACATGAGGCAGAGAATGGCTGGAAGATACCCAAACTTTGATGTTAGAAGGAGGTCTGGTTCTTCCCCAGTTCCTGAACAGACTTGGGGTCTTTTAGGTTCTTCTGGTCCTTATTTGGTATTTCATGGTCAAGCTCCTGGGTTCACATTGTCTAATGGTAGCTCAACAGGTGGTCCTAGGCGCGTTGATTTTGGTGGCTACTTAATGAGTCCTAGACTGGAAGAATTTATTGAACAATTCACTATGAACAATCGACTTGGTCCATCCCCGGCCATGCATTCTTCAATTGATGCTATGCCTACTATTAAAATCACACAGGCACATCTTCGCGCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGAACTGGGCTCTGAGGCCAGGGAGATGCCATGTAACCATATTTACCACTCGGACTGCATTGTTCCTTGGTTAGTTCAGCGTAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACGTGCTAGTTCTCATGGTAGACGAATTTGGAGAGGAGGAAGGAATGTGAACAGAAGTGGTGACAATGGTATCTCCAGGGGCAGGGAGAATAGCCCAGTGAACCATGGAAGGAGAAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCCAGTTCAAATACTAATCATTATGCTGAGACTGGGGGAAGCAGCTCTTCATGA 1536 0.4238 MRDEGPERENVVDEAIKDPQDLRQSSQEVVFVLLAFESIFSSFSSIFADADAEENAQAAEIERRIELETKAEKHIQKLLLLGAGESGMSTIFKWARSCIFSTSWDGILVRFVLSTDLPIDRKASLQQFLEKRKGRRLVLFYFSLFSLSSKLRISLNQCSEFSYIVLFSLVFSSFSLKESETIGVSFSIYISSERERMSSGATYWCYTCRQPIFLAVGDSICPYCDGGFVQELDEMRGIAPQHGYSSQMEEFHQMPDIFDAIHAVVSQRGSVPRNGLRDAVDSYMRQRMAGRYPNFDVRRRSGSSPVPEQTWGLLGSSGPYLVFHGQAPGFTLSNGSSTGGPRRVDFGGYLMSPRLEEFIEQFTMNNRLGPSPAMHSSIDAMPTIKITQAHLRADSHCPVCKERFELGSEAREMPCNHIYHSDCIVPWLVQRNSCPVCRVELPPQGRASSHGRRIWRGGRNVNRSGDNGISRGRENSPVNHGRRNPLSFLWPFRSSSSNTNHYAETGGSSSS* 512
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03199 511 MobiDBLite consensus disorder prediction 445 482 - -
Rops11g03199 511 FunFam E3 ubiquitin-protein ligase RING1-like 360 444 - -
Rops11g03199 511 SMART ring_2 397 437 IPR001841 -
Rops11g03199 511 Pfam Ring finger domain 396 438 IPR001841 -
Rops11g03199 511 ProSiteProfiles Zinc finger RING-type profile. 397 438 IPR001841 -
Rops11g03199 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 360 444 IPR013083 -
Rops11g03199 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 301 442 - -
Rops11g03199 511 Pfam Jas motif 118 135 IPR018467 -
Rops11g03199 511 SUPERFAMILY RING/U-box 377 444 - -
Rops11g03199 511 CDD RING-H2_RNF126-like 397 438 - -
Rops11g03199 511 Pfam zinc-ribbon 202 232 IPR039525 GO:0061630
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops11g03199 Rops-Chr11 60174135 60186556 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03199 341 453 C3H Transcription Factor Family AT5G01980 40.000 5.05e-23 100
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops11g03199 zf-RING_2 1.2e-10 CL0229