Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops11g03182 | ATGCCACGTTGCAGGCTGGGGTACATCCACGTGGTGAACAATGATTTCACGATGTGGGAGATGTATGCGATTGGGGGGAGTGGGGGACCCACGATTAACAGTCAGGGGAACCGTTATACGGCTCCTGAGGATGGTTTTGCTAAGGAGGTTACGAAGAGTGGTCTTGTTGCTATCGCTGGGCTGTTTGGAAATGTCCTTGTTGATATGTTGGCTCTTGGACCTGTGGCCCCATTTGATGCTGCTTCATGTTTTCCTGCAATTGGTATGGCCGTCATATTATCTACGTGGGCAGAAAATTATGGGGATCCTATCGAGAGCAAGGACTTGCTTACCCAATTCAGGGGTGCTGCTGTGGCCATTGCTTGTGATGAAAAATAG | 378 | 0.4947 | MPRCRLGYIHVVNNDFTMWEMYAIGGSGGPTINSQGNRYTAPEDGFAKEVTKSGLVAIAGLFGNVLVDMLALGPVAPFDAASCFPAIGMAVILSTWAENYGDPIESKDLLTQFRGAAVAIACDEK* | 126 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops11g03182 | 125 | PANTHER | PECTATE LYASE 18-RELATED | 1 | 53 | IPR045032 | GO:0030570 | |
| Rops11g03182 | 125 | Pfam | Sugar-tranasporters, 12 TM | 52 | 125 | IPR008509 | GO:0015098|GO:0015689|GO:0016020 | |
| Rops11g03182 | 125 | SUPERFAMILY | Pectin lyase-like | 1 | 65 | IPR011050 | - | |
| Rops11g03182 | 125 | Gene3D | - | 1 | 68 | IPR012334 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops11g03182 | Rops-Chr11 | 59557605 | 59558290 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Rops11g03182 | 1 | 52 | Polysaccharide Lyase | AT3G53190 | 88.462 | 2.91e-27 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops11g03182 | K24175 | - | jre:108989590 | 125.176 |