Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03175 ATGATAAGAGCACAAAAAGAGCTGGATCAAGTGATAGGTAGACAAAGATTGCTTGTTGAATCTGACCTACCAAAATTACCATACCTTAGAGCAATCTGCAAGGAGACCTACCGTTTGCATCCATCTACACCCCTTAGTGTTCCCAGGGTGTCAACTGAAGCATGCAAAGTTAATGGCTACTACATCCCCAAGAACACAAGGTTAAATGTGAACATATGGGCCATAGGGAGAGACCCAAATGTGTGGGACAACCCATTAGAGTTCAATCCAGAGAGATTTTTAAGTGGGAAGGATTCAGAAATTGATCCTAGTGGAGTTGATTTTGAGTTGATTCCTTTTGGAGCTGGAAGGAGGATTTGTGCAGGGTATAGAATGGCTATTGTGGTTATTGAGCATATTTTGGGCACTTTGGTACACTCTTTTGATTGGAAGTTACCAAAAGGAAAAGAGCTGAACATGGATGAGGCATTTGGAATTACTTTGCAAAAGGCAGTGCCTTTGTCAACTATAGTTAGCCCTAGGTTGGTCCCAGATGCTTATGTTTGA 546 0.4176 MIRAQKELDQVIGRQRLLVESDLPKLPYLRAICKETYRLHPSTPLSVPRVSTEACKVNGYYIPKNTRLNVNIWAIGRDPNVWDNPLEFNPERFLSGKDSEIDPSGVDFELIPFGAGRRICAGYRMAIVVIEHILGTLVHSFDWKLPKGKELNMDEAFGITLQKAVPLSTIVSPRLVPDAYV* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03175 181 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 113 122 IPR017972 GO:0005506|GO:0016705
Rops11g03175 181 PRINTS P450 superfamily signature 111 120 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS P450 superfamily signature 120 131 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS P450 superfamily signature 31 42 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PANTHER CYTOCHROME P450 98A9 3 178 - -
Rops11g03175 181 SUPERFAMILY Cytochrome P450 3 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS E-class P450 group I signature 110 120 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS E-class P450 group I signature 71 95 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS E-class P450 group I signature 30 48 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 PRINTS E-class P450 group I signature 120 143 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 Pfam Cytochrome P450 3 162 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Rops11g03175 181 Gene3D Cytochrome P450 1 174 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03175 Rops-Chr11 59004260 59005065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03175 1 180 Cytochrome P450 AT5G07990 54.891 9.69e-71 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03175 K13083 - vum:124834015 330.102