Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03162 ATGGAAGAATCAATTGGGATGCAATCGGAAGAAAAGAAAATCTCTATGGAGAAAAATAACAAAAGAAGGCTCAAAACACCTGCCCAGCTTATGGCCTTGGAAAATTTTTATAATGAGCACAAATATCCCACAGAGGAAATGAAATTAGAACTTGCTGAAGAATTAGCGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGGTGAAAGATGAAGCATGTGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTGGGCTAGGGCAGGATTCATGTGGAAGCACTAAACATGGAGATTATAGGTATCTGGATCCCAAAGAAGTTGAGAGTCAAGGCCACTACAACCATGAATTTTCAGTTGCAGATATGACCTCCAGACATATGAGCCATTATACCGAAAATGATAGTGCAACAGATAACACATCATCTGAGAGTAGCTCATCTTTGCAAGAACGATTGTTTCCTCAAAGACAGGATCCATTTGAAATGGAGCCTTCTAGATATCTAACACCCAATGGAGCTCTTCCATCTGGAAATAATCCCAAGGGTGCAATCAAAATGGGACATAAACCATCAGGATATTTAAAAGTGAAGGGAGAGATAGAACATGCTTCCATAACTGCTGTTAAGAAGCGATTAGGAAGGCATTATCAGGAAGATGGTCCACTACTTGGTGTAGAATTTGATACAATTCCTCCGGGGGCATTTGAATGTCAAACTGCAGATCCAGTTAATGAACCATACCATGTTGTAAATCCTGCTATTCCGAATTCTCCAGAAGTCTCTGCTGTGAAAAGGCAATCCAGCCATAGCTCTAGATATGATTCATATATTACCAAATTAAGTTCCCAAGATTCACATTTGGAAGGAGGATACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAACGGGATAAGAAAGCTCGCCAGCATATAAAACAAAGACCAACTTTTCACAGTTATACCAATCCTTTGCCTGGCAAGAACTCTTCCCTGGATTTGTATGTAGACTCCACTGGGGAAGCATCTGCTTATAATAGCACTAGAAATCATAGAATGGGCACTAAGCATGGTGTTGACTGGATGAGATCTGATTCTTATAACCCTAGTGATCACTATGAAGAGAATAACCTTGCAGTTAAGCAGACAGATTCACTGCTCCATGTCAACAATAACAGCAATCTGAAGAATGTACAAAGGAATGAATATGCAAAATCTAAGCCTTCAAATTCAATACATAATTCTCGAATTTCTATGGATACTGAAGAAAGAAGGCCTTCAAAAAGGATGGCAAAGGAAGAGAAGTTTACTGGGGATAGAAAGGTCAAAAAACAATATCGTGATTCAGATGGAGTAAGGATGCTTTCGAATGAAATGATGGTTGCAAAGCGAGCTAAAGTTGATCTACTTCACCAATATGATGATGTTAAACAAGCACCTGCTGCTGAGATGGAACAAAGGAAAAGTCAGAGGTCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACCGCTGAAACTAGTTCCTCACTGGATTAA 1587 0.3976 MEESIGMQSEEKKISMEKNNKRRLKTPAQLMALENFYNEHKYPTEEMKLELAEELALTEKQISGWFCHRRLKDKRLVKDEACANGRQDRSSGVIQDRGSGLGQDSCGSTKHGDYRYLDPKEVESQGHYNHEFSVADMTSRHMSHYTENDSATDNTSSESSSSLQERLFPQRQDPFEMEPSRYLTPNGALPSGNNPKGAIKMGHKPSGYLKVKGEIEHASITAVKKRLGRHYQEDGPLLGVEFDTIPPGAFECQTADPVNEPYHVVNPAIPNSPEVSAVKRQSSHSSRYDSYITKLSSQDSHLEGGYFGSLHDSDFQDKRDKKARQHIKQRPTFHSYTNPLPGKNSSLDLYVDSTGEASAYNSTRNHRMGTKHGVDWMRSDSYNPSDHYEENNLAVKQTDSLLHVNNNSNLKNVQRNEYAKSKPSNSIHNSRISMDTEERRPSKRMAKEEKFTGDRKVKKQYRDSDGVRMLSNEMMVAKRAKVDLLHQYDDVKQAPAAEMEQRKSQRSAAEMPSSFSEDETAETSSSLD* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03162 528 CDD homeodomain 21 75 IPR001356 GO:0003677
Rops11g03162 528 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 528 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 148 168 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 88 106 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 145 195 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 432 459 - -
Rops11g03162 528 Gene3D - 8 92 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 83 112 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 493 528 - -
Rops11g03162 528 SMART HOX_1 18 80 IPR001356 GO:0003677
Rops11g03162 528 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Rops11g03162 528 MobiDBLite consensus disorder prediction 416 459 - -
Rops11g03162 528 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Rops11g03162 528 MobiDBLite consensus disorder prediction 506 528 - -
Rops11g03162 528 SUPERFAMILY Homeodomain-like 16 79 IPR009057 -
Rops11g03162 528 MobiDBLite consensus disorder prediction 416 431 - -
Rops11g03162 528 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03162 Rops-Chr11 58605156 58610696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03162 13 528 Homeobox Transcription Factor Family AT4G03250 41.021 5.69e-88 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Rops11g03162 Homeodomain 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03162 - - gmx:100803515 755.362