Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03160 ATGATAGTAGTGATGATGAAGAGAGAGAAAGGGTCGGCAACAACAATAACTGGAGAAGAAAATACAACTTCAGTTGTGGCTACTACAAGGAGGTTGCCTTCAGATTCTGGTGCTTTTGCTGACTGGGCTGCCACTCCCCCTTCCTCCGTAACTGCCGCCGCAGTTTCCGGCCGTGCTTCAGCCCCAGTCGATGAACTCTCCCTCGGCTTCAATGCTTCCCCTGCCGGTGGATCCGCCACCGGAATGTGGCCCGGTGCTGCGTCTAGGCCAATCAACTACAGCCCCGTGGCACCGGACATGTTGGGTTTCATGGTGTCACCAGCTTACCACCGCCACCACCACCACAACGAAACCCTTGTTTCTGATTCTCACTCATTGAACGGTTCCAACCCTGCCACTGCACTTGGTGTTGGTGTAATCCCTCTACTAACATCTTCTCAAGGAGGGGGAATTCAGTTATGGCAGGAACAACAACATCATCATCATCATCAACAAGGTCATCATCACTATCTGAAGAAACATGCTCTTCATGAACATGATAATAGTGATGGTGGTGAAATTACTGGTTTGGTTACAACAAGTGGTGGAACAACGTGCCAAGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCATAGGAGGTGCAGGGCGTGTTGTAAAAGTCGTGGTTTTGATTGCCCTACTCACGTGAAGAGCACGTGGGTTCCGGCTGCAAGGCGGCGGGAACGGCAGCTCATGGCGACCACGGCGGCTGCTGGGTCTAATGGTTCGATTTCTAGTCAAGCCAAGAAACCTAGGCTTGTTGCTTCTCAAACCACAACAAACTCTCATACTTCCACTTCTAACACCACTCCCCCTAGAAGCTTTGACACTACTTCCAGTCATCAAGATGCGAGTTTCAAAGAGTCATTACCTTGTCAAGTGCATGCACCAGCTGTGTTCAAGTGTGTTAGAGTGACAGCAGTGGATGATGGGGAAGATGAATATGCCTATCAAGCTGTTGTGAAGATTGGAGGCCATGTGTTTAAAGGGTTTCTTTATGATCAAGGGGTTGAGGATAAAGATGGTTATCCTAATCTATCTGAATTGCATTTGGGTGGAGGTGGAGGTAGTGGAGATGGAAATGTTGGAAGTGGTGGTGGTAGAAATGGGGTTTCATCTTCATCTCCTATGATGGATCCTTCTGATGTTTATGCTGCTTCTGGTGGGGGGTTTCTTGGAGGTTCATCAACTTATGGCTTGAAATAA 1248 0.484 MIVVMMKREKGSATTITGEENTTSVVATTRRLPSDSGAFADWAATPPSSVTAAAVSGRASAPVDELSLGFNASPAGGSATGMWPGAASRPINYSPVAPDMLGFMVSPAYHRHHHHNETLVSDSHSLNGSNPATALGVGVIPLLTSSQGGGIQLWQEQQHHHHHQQGHHHYLKKHALHEHDNSDGGEITGLVTTSGGTTCQDCGNQAKKDCSHRRCRACCKSRGFDCPTHVKSTWVPAARRRERQLMATTAAAGSNGSISSQAKKPRLVASQTTTNSHTSTSNTTPPRSFDTTSSHQDASFKESLPCQVHAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVEDKDGYPNLSELHLGGGGGSGDGNVGSGGGRNGVSSSSPMMDPSDVYAASGGGFLGGSSTYGLK* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03160 415 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 114 401 IPR007818 GO:0003700|GO:0006355
Rops11g03160 415 Pfam Domain of unknown function (DUF702) 196 352 - -
Rops11g03160 415 MobiDBLite consensus disorder prediction 249 296 - -
Rops11g03160 415 NCBIfam LRP1 C-terminal domain 304 351 IPR006511 -
Rops11g03160 415 MobiDBLite consensus disorder prediction 380 394 - -
Rops11g03160 415 MobiDBLite consensus disorder prediction 358 395 - -
Rops11g03160 415 NCBIfam putative zinc finger domain, LRP1 type 198 240 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03160 Rops-Chr11 58447645 58450763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03160 26 397 C2H2 Transcription Factor Family AT5G12330 49.148 5.32e-95 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Rops11g03160 DUF702 4.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03160 - - lja:Lj6g3v0959410.1 484.567