Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03157 ATGGTTCTGCAGATACACAAACCACTAGTTCTGCAATATCTACCTTTAGGATCTGTCACTATGACTTCTTCACTCGTGGAGATCCAAGACGAACAGGTCCTGGGCAACAATTTTCAGGATCTTTCAGTCAAAGATCTGAGTGGAAAGGGGAGTGAAGAAGAGATTCACGGGGTGGGATTTGGAAACCATGGGGGAATTTGTGCTATTTGCTTGGATAAGATAGTGCTGCAGGAAACAGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGTAACATGCATCCTTCGTTGGGCCACATACAGTCAGAAAGTTACATGCCCTCAGTGTAAACATCCGTTTGAGTTCCTCAATGTCCATCGTTCACTAGATGGCAGCATTCAAGATTTCATGTTTGAGGAAAGTGTTTGCTTACTGCTTCGGGCCAAATGGTTCCAACCTTTAACTGTTGAGGGCCATGTGGATCACGAGGATACCTATGATCTTGCCTATGATGGAATGCAAGATTACTATCAATATGAGGACGAGCATGATGATCTAGATGATGATGATTACTATGGTGGTAGCTCATCAAGCTTTCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTCAGGGGTGGGCGTCAAGAAGCTCGGCCGGTCCATCGATCAAACTTCCAAGATTCAGGAGCAAGTTCGTCCCGAGAGCCAAAGAAGAAAGAGAAAGAGGCTGGGAAAAGTACAGCAGGGAGAAGGGCAAAGAGGGCAATGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAGCATCAGCAGCATTTGCTAAGGTTAGGTAGGAAGTGA 825 0.4594 MVLQIHKPLVLQYLPLGSVTMTSSLVEIQDEQVLGNNFQDLSVKDLSGKGSEEEIHGVGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYSQKVTCPQCKHPFEFLNVHRSLDGSIQDFMFEESVCLLLRAKWFQPLTVEGHVDHEDTYDLAYDGMQDYYQYEDEHDDLDDDDYYGGSSSSFRIGNRRWGDNGYVRGGRQEARPVHRSNFQDSGASSSREPKKKEKEAGKSTAGRRAKRAMKREAADKAAEAKHQQHLLRLGRK* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03157 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 172 IPR013083 -
Rops11g03157 274 MobiDBLite consensus disorder prediction 227 267 - -
Rops11g03157 274 Pfam Ring finger domain 67 110 IPR001841 -
Rops11g03157 274 SUPERFAMILY RING/U-box 66 116 - -
Rops11g03157 274 ProSitePatterns Zinc finger RING-type signature. 85 94 IPR017907 -
Rops11g03157 274 MobiDBLite consensus disorder prediction 205 274 - -
Rops11g03157 274 CDD RING-HC_Topors 67 113 - -
Rops11g03157 274 ProSiteProfiles Zinc finger RING-type profile. 67 110 IPR001841 -
Rops11g03157 274 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 24 274 - -
Rops11g03157 274 SMART ring_2 67 109 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03157 Rops-Chr11 58414834 58420276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03157 23 274 C3H Transcription Factor Family AT5G19430 55.351 1.19e-90 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03157 - - gmx:100785472 352.829