Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03147 ATGGCTGAACATGGAATGACAATGTCTCACTCCCATAGCTCAGATGATGAATCCTCAGACCAACAAACTCCCTACTCCGCCGCAGGGGGATCCTCCTCCCACCGTCAACCACCACCCTCCGCCGTCCCCCACGGCCAAATACCCACACCACCTTCCAAAAAGCCACGTGGCAGGCCCCCAGGTTCCAAAAATAAGCCTAAGCCACCACTGGTTATAGCCCAAGACAGTGACCTAGCTATGAAACCGGTGGTGATTGAAGTCGGCGACGGCACCGACGTGCTGCAAGCGGTGATTCAGTTCGCTCAAGACCGCAGCTCTGGAATCACCATCATGAGTGCTTCTGGCTCAGTTTCTAACGTTACCCTTTGTCACCCTTTCACACATACACCTGCTTACACCCTTCATGGACCCTTCACTTTGTTAGCCCTCACTGGAACTTATCTACCTCCCCGTTCTCATGCTTCTACTCATCCTCCTGTTGGTGTTCCTTCTTCTTCTTCATCATCATCAAATCCTAATCAACCACCACCTGGTTCTTTTGGGATTTCCTTCACAGGCTCCCAAGGTCAGATCTTTGGTGGGGTTGTTGGTGGGAAGGTGGTGGCAGGCAGTAGTGGTGTGATGGTGATGGCTACATTGTTCAAGAATCCTGAGTTTCACAGAGTTGGTGTAAGTGCTAATCAAGGGGATGAAGGAGGAGATGATAACCCTAATGCCCCTAGTGGTGGTGGTGGTGGTAGTGGGAGTGATGGCATGACTGGTTTCAATGTTGCAAATCCTACCCCTTTGAATTGCCAACTCCCTTCTGATGCCATGCAATGGGGCCACACTCGCCCTCCAAATTACTGA 849 0.5135 MAEHGMTMSHSHSSDDESSDQQTPYSAAGGSSSHRQPPPSAVPHGQIPTPPSKKPRGRPPGSKNKPKPPLVIAQDSDLAMKPVVIEVGDGTDVLQAVIQFAQDRSSGITIMSASGSVSNVTLCHPFTHTPAYTLHGPFTLLALTGTYLPPRSHASTHPPVGVPSSSSSSSNPNQPPPGSFGISFTGSQGQIFGGVVGGKVVAGSSGVMVMATLFKNPEFHRVGVSANQGDEGGDDNPNAPSGGGGGSGSDGMTGFNVANPTPLNCQLPSDAMQWGHTRPPNY* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03147 282 PIRSF ESCAROLA 1 277 IPR014476 GO:0003680
Rops11g03147 282 ProSiteProfiles PPC domain profile profile. 77 236 IPR005175 -
Rops11g03147 282 MobiDBLite consensus disorder prediction 158 184 - -
Rops11g03147 282 MobiDBLite consensus disorder prediction 223 282 - -
Rops11g03147 282 MobiDBLite consensus disorder prediction 152 184 - -
Rops11g03147 282 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 213 IPR005175 -
Rops11g03147 282 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 222 - -
Rops11g03147 282 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 11 242 IPR014476 GO:0003680
Rops11g03147 282 Gene3D - 80 231 - -
Rops11g03147 282 MobiDBLite consensus disorder prediction 18 39 - -
Rops11g03147 282 CDD DUF296 81 157 IPR005175 -
Rops11g03147 282 MobiDBLite consensus disorder prediction 252 271 - -
Rops11g03147 282 MobiDBLite consensus disorder prediction 1 75 - -
Rops11g03147 282 MobiDBLite consensus disorder prediction 41 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03147 Rops-Chr11 58299694 58300542 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03147 53 282 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.449 3.67e-40 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03147 - - tpra:123915288 187.963