Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03146 ATGGCCCTTGAAAATTCAGAAAATACGCAAATAAACTGTGAGACATCTCGAAGATGCCTCCATGGCAAGGGACTCCCTTGCAGTTTTAAGTGTAATGGGTTTTCTAACTTGATTTGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTTCAAGTCCTTCTTGGGTAGGCCTTGGAAAAAGTACTCAAGGACTTTGTTTCTTAAAACTGATTTAGATGGGTTGATTCATCCAAAAGGGTGGAATGAATGGAGTGGAAACTTTGCAACCTCAACTTTGTACTATGGAGAGTATATGAACACTGGCAATGGTGCTTCTACACATAATAGGGTGAATTGGCCTGGTTTCCATGTGATAAATAGTGCTAATGAGGCCTCACCCTTCATAGTGAGTCATTTTCGGCAAGGTGTAATATGGATTCCAACTTATTCCAACTTCAGGGGTGCCTTTTTGGTCTAG 465 0.4108 MALENSENTQINCETSRRCLHGKGLPCSFKCNGFSNLIWVRPASEFVMSKDSFKSFLGRPWKKYSRTLFLKTDLDGLIHPKGWNEWSGNFATSTLYYGEYMNTGNGASTHNRVNWPGFHVINSANEASPFIVSHFRQGVIWIPTYSNFRGAFLV* 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03146 154 PANTHER PECTINESTERASE 46 144 - -
Rops11g03146 154 Gene3D - 39 150 IPR012334 -
Rops11g03146 154 SUPERFAMILY Pectin lyase-like 52 144 IPR011050 -
Rops11g03146 154 Pfam Pectinesterase 41 138 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03146 Rops-Chr11 58240661 58243008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03146 40 143 Carbohydrate Esterase AT3G60730 68.269 3.69e-46 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03146 K01051 - gmx:100792852 177.948