Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03133 ATGTTTGTGGAGCATCCAGTTCACATTCCTATTATTGTTGACCAAATGAGTGAGGATGAGGTTGCAGCCAATGAAGGGGGTGGTGGGCCTGAGGTGGCCCCCATATCTGACAATGATGTTGAGGAAAATGTTGAGGTTCATAATCAGGAAGTTGGAGGACAGAATGAAGAAGATGTTGGGTCATTGGTAGCGGGTGCAGGGCCTGAGGTTGCTACCTCTGAAGATGGTGATGAGGAGGAGGATGTTGACTATGACGGTGATGGAGATGAGGAAAACGATGAGTCGGATGAGGAAGATGATGAGGAGGAGGAGGATCCAAATGAGGATGACGATCCAGATCAGGAGGAGGAAGAAGGTTGGGGGGAAACAGCCCATAGGGCAAACTATGTTGAAAATATTAACGATGAAGTTGGTGCGTTTGGGCCTAAAATGTATGATAATTTGAGTGTTGGTGGAGATAGTTATGAATCTGAAAACTTAAAAGGCCCTGTGAGTGATGATGATGTTGTTGGTGGAAGAGGACATGTGTTTCCACAATTTGATGAGCAAGCACCGTTTGGACATGTAAATCTAGAGGTGGGTATGGAGTTTGCAAATCTGGATGCCTTTAAGAAGGCCCTAAAGGATTATACTATTTACTATGGCCGAGAGATTAAATGGGTCAAAAATGATAAAGGTACTGGAGCTGATATTGCATCAACTGGAGCTGGGCCAACTGGTACAACTGGGCCAACTGGGTCACTTCCTACAACAACTTGGCCAGCTGCACCTCCTGCACCATCAGGATATACACCACACCCTCGGTTCAGACCACCTCATATGAGAGCTTCCAGTTCATCTGCATCAACTGCAACATTTTGCAGTCATAATACTCTTCAGTATGCATTTCACTTATGCATTTCTGTTCAGTCCAGGTTCCATGACGGTGAGCCATACTGCATCAGTAGTTCAGGTCCACAGATCATACTGCATGAGGAAATTGTTGGTATCTGTGTTTCATCATCCTCCTCCAATTCTTCTCCTTCACCTGATATCTCTCAAAACCCACCCGAGTCATTTGAATTCCATCTAACTCCCTCAGAGAGTTACATTGAAGAGTTCAGAGCCATGACACCAACTCTTAGATATGACAGTGTCTGTAGCTACAAAGAATCTGAACATGAGTGCTCAGTATGTCTCACTCAATTTGAACCAGAATCAGAGATAAACTGTTTATCTTGTTGCCATGTTTTCCATAAATCATGTTTAGAGAAGTGGTTGGACTATTGGAACATAACATGCCCACTTTGCAAGACTCCCTTAATGCCTGAAGATGATGCATCATGCATTTGGTGA 1335 0.4412 MFVEHPVHIPIIVDQMSEDEVAANEGGGGPEVAPISDNDVEENVEVHNQEVGGQNEEDVGSLVAGAGPEVATSEDGDEEEDVDYDGDGDEENDESDEEDDEEEEDPNEDDDPDQEEEEGWGETAHRANYVENINDEVGAFGPKMYDNLSVGGDSYESENLKGPVSDDDVVGGRGHVFPQFDEQAPFGHVNLEVGMEFANLDAFKKALKDYTIYYGREIKWVKNDKGTGADIASTGAGPTGTTGPTGSLPTTTWPAAPPAPSGYTPHPRFRPPHMRASSSSASTATFCSHNTLQYAFHLCISVQSRFHDGEPYCISSSGPQIILHEEIVGICVSSSSSNSSPSPDISQNPPESFEFHLTPSESYIEEFRAMTPTLRYDSVCSYKESEHECSVCLTQFEPESEINCLSCCHVFHKSCLEKWLDYWNITCPLCKTPLMPEDDASCIW* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03133 444 Pfam Ring finger domain 388 431 IPR001841 -
Rops11g03133 444 MobiDBLite consensus disorder prediction 18 127 - -
Rops11g03133 444 ProSiteProfiles Zinc finger RING-type profile. 389 431 IPR001841 -
Rops11g03133 444 SUPERFAMILY RING/U-box 383 436 - -
Rops11g03133 444 SMART ring_2 389 430 IPR001841 -
Rops11g03133 444 PANTHER - 332 439 IPR044249 -
Rops11g03133 444 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 356 436 IPR013083 -
Rops11g03133 444 CDD RING-H2_RHA1-like 386 434 - -
Rops11g03133 444 MobiDBLite consensus disorder prediction 72 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03133 Rops-Chr11 57994855 58002264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03133 353 438 C3H Transcription Factor Family AT2G04240 61.798 4.13e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03133 K16285 - gmx:100786803 189.504