Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03110 ATGTCACGGACTGATACAATGATGATGAATTCGGATCTTAACAGAACTGGTTCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGAAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCAAGGCCTGAGAAGGAATACCAGTCGTTTTCTCTTATCTACAATGATAGATCACTGGACTTGATTTGCAAGGATAAAGATGAAGCTGAGGTTTGGTTCAGTGGATTGAAAGCATTGATTTCACGCAGTCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAAGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCTTAAATTCTCCATTTGGTAGTACTGAAAGCTTGCAGAAGGACAGTGGAGATCATCTTCGTCTTCATAGCCCATATGAAAGCCCCCCTAAGAATGGTTTGGATAAGGCATTTTCTGATGTGATTTATTATCCTCTTCCTCCAAAGGGTTTCTTCCCTCCAGATTCCACCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGCACGCATGGTCACATGAAGACAATGCCCATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGGCTCACCGAGTTGGGAGTTGTTTTGATGTCAAAATGGATTCTCTATTGCCCAAAGCCTTGGAATCGGCTGTAGTCCTTGATGTACAAAATATTGCTTGTGGTGGCCAACATGTGGCCTTAGTGACCAAACAGGGAGAAGTTTTCTCCTGGGGGGAAGAATCAGGAGGTAGGCTTGGGCATGGAGTTGATTCTGATGTTCTCCATCCAAAGCTTATTGAATCTCTAAGTAATACGAATATTGAACTTGTAGCATGTGGAGAGTATCATACTTGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGGCATGGGAATCAGGTGAGCCACTGGGTCCCGAAAAGAGTCAATGGCCCCTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGTCCATGGCACACTGCTGTCGTAACCTCTGCCGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCCTGCCAAGGGAAATAGAGTCCCTGAAGGGTCTTCGTATTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAGGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTTGGGCATGGTGACAAGGAAGCCAAACTTGTTCCAACCTGTGTTGTAGCCCTTATTGAACCTAACTTTTGTCAAGTTGCTTGTGGTCATAGTATGACTGTTGCACTTTCTAGGTCTGGACATGTCTATACCATGGGGAGTGGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACTCGTGTTGAAGGAAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGGAAAGGTGCAAATGGTCGTTTAGGCCATGGGGATACTGATGATAAAAACTCCCCAACATTAGTAGATGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGTGGTACAAATTTCACTGCAGCCATATGCCTGCATAAATGGGTATCTGGTGTTGACCAATCCATGTGCTCTGGCTGCCGTCTGCCATTTAATTTCAAAAGGAAACGTCACAATTGTTATAATTGTGGACTTGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAGCTGTTTTAATAAAATAAAGAAAACCACAGAAACTGATTCTTCGTCTCAGTCTTCTATGAGCAGAAGAGGAAGTATTAATCAGGGGTCACTTGAGTTTATTGGTAAGGATGATAAATTGGATTTCAGATCTCGTAATCAACTTGCCAGGTTCTCTTCAATGGAATCCTTGAAACAAGTGGACAGCAGATCTTCAAAGAAAAATAAGAAATTGGAATTCAACAGTAGCCGTGTCTCGCCGGTTTTGAATGGAGGTTCACAACGGGGAGCGATGAATATTTCTAAATCTTTTAATCCTATTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGGGCAACATCCCCAACATCTAGAAGGCCTAGTCCGCCTCGTTCAACTACTCCAACCCCAACACTAGGAGGACTTACATCCCCAAAGATGGTTGTGGATGATGCTAAGAGGACCAATGATAGCCTCAGTCAGGAGGTTGTTAAATTAAGATCTCAGGTGGAAAACTTGACTCGGAAAGCCCAGCTTCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGTGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCTCAGTTGAAGGAGATGGCCGAGAGGCTGCCTGTAGGAACAGCCAGGAATGTGAGATCACCCTCTCTTGCTTCCTTTGGCTCCAATCCTGGTTCCAATGACATTAACAATGCTTTCAATGATCGATTGAATATTCAAACAAGAAGCCCAGAATCAGACTTAACTGGGTCAAATGACCAATTACTTTCAAATGGATCAAGCACTATCACCAACCGTAGTGCAGGTCACGGTAAACATAGTCAGTCTGATGCCACTAGCAGAAATGGGTGCAAAACAAAGGATAATGAGTCGCGTAATGAGACGGAATGGGTTGAGCAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCTGGAGATGTAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAAAAACAGGCAGAACTATGGTGGGCTGAGAATCGGGCAAGAGTATATGAACAGTACAACGTGCGCATGATTGACAAGTCGACCATTGGTGTTGGAAGTGAGGACCTGGCTCATTGA 3333 0.4374 MSRTDTMMMNSDLNRTGSVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSTESLQKDSGDHLRLHSPYESPPKNGLDKAFSDVIYYPLPPKGFFPPDSTSGSVHSVSSGGSDSTHGHMKTMPMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGAHRVGSCFDVKMDSLLPKALESAVVLDVQNIACGGQHVALVTKQGEVFSWGEESGGRLGHGVDSDVLHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRIVQAACGVWHTAAVVEVMVGNSSSSNCSSGRLFTWGDGDKGRLGHGDKEAKLVPTCVVALIEPNFCQVACGHSMTVALSRSGHVYTMGSGVYGQLGNPQADGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNSPTLVDALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMAPNPNKPYRVCDSCFNKIKKTTETDSSSQSSMSRRGSINQGSLEFIGKDDKLDFRSRNQLARFSSMESLKQVDSRSSKKNKKLEFNSSRVSPVLNGGSQRGAMNISKSFNPIFGSSKKFFSASVPGSRIVSRATSPTSRRPSPPRSTTPTPTLGGLTSPKMVVDDAKRTNDSLSQEVVKLRSQVENLTRKAQLQEIELERTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKEMAERLPVGTARNVRSPSLASFGSNPGSNDINNAFNDRLNIQTRSPESDLTGSNDQLLSNGSSTITNRSAGHGKHSQSDATSRNGCKTKDNESRNETEWVEQDEPGVYITLTSLPGDVIDLKRVRFSRKRFSEKQAELWWAENRARVYEQYNVRMIDKSTIGVGSEDLAH* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03110 1110 Pfam Transcription factor BRX N-terminal domain 920 952 IPR027988 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 771 808 - -
Rops11g03110 1110 FunFam PH, RCC1 and FYVE domains-containing protein 1 493 664 - -
Rops11g03110 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 66 941 - -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 439 487 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 554 603 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 502 551 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 608 655 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Rops11g03110 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 383 435 IPR000408 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 217 236 - -
Rops11g03110 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 555 606 IPR000408 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 218 235 - -
Rops11g03110 1110 SUPERFAMILY RCC1/BLIP-II 269 660 IPR009091 -
Rops11g03110 1110 SMART fyve_4 657 726 IPR000306 GO:0046872
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 331 IPR000408 -
Rops11g03110 1110 Coils Coil 869 910 - -
Rops11g03110 1110 Gene3D - 501 670 IPR009091 -
Rops11g03110 1110 Gene3D - 225 500 IPR009091 -
Rops11g03110 1110 Gene3D - 21 139 IPR011993 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 792 808 - -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Rops11g03110 1110 Pfam FYVE zinc finger 659 725 IPR000306 GO:0046872
Rops11g03110 1110 Pfam Pleckstrin homology domain 24 130 IPR001849 -
Rops11g03110 1110 SUPERFAMILY PH domain-like 22 130 - -
Rops11g03110 1110 CDD FYVE_like_SF 668 721 - -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 554 IPR000408 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 139 195 - -
Rops11g03110 1110 Coils Coil 918 945 - -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 984 1039 - -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 984 1024 - -
Rops11g03110 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 671 732 IPR013083 -
Rops11g03110 1110 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 492 - -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 607 658 IPR000408 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 1025 1039 - -
Rops11g03110 1110 Pfam Unstructured region between BRX_N and BRX domain 961 1030 - -
Rops11g03110 1110 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Rops11g03110 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
Rops11g03110 1110 SUPERFAMILY FYVE/PHD zinc finger 659 730 IPR011011 -
Rops11g03110 1110 FunFam Putative E3 ubiquitin-protein ligase HERC1 665 733 - -
Rops11g03110 1110 CDD PH_PLC_plant-like 21 131 - -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 145 175 - -
Rops11g03110 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 663 725 IPR017455 -
Rops11g03110 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 544 562 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 602 623 IPR000408 -
Rops11g03110 1110 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 836 867 - -
Rops11g03110 1110 MobiDBLite consensus disorder prediction 955 974 - -
Rops11g03110 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03110 Rops-Chr11 55794547 55807837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03110 929 1101 Major Intrinsic Protein MIP AT1G31880 34.595 2.91e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03110 - - gmx:100791947 1953.33