Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03094 ATGGAACAAGGTGGTGGAGTGGTAAATGGGTCTCATGAAAGGAATGAACTTGTTAAAGTTAAGCACGGTTCGGATAGTGGGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGTGATACTGTTGGATTAACACCCACTGGTGATGTCTTTGTTGCTTGCCATGAGTGTGCCTTCCCACTTTGTCATCCTTGTTATGAATATGAGCGAAAAAATGTGAGCCAATCTTGTCCCCAATGCAAGACTAGATACAAAAGTCACAAAGAGAGTCCTCAAGTGGAGGGAGATGATGATGAAGATGATGTTGATGATTTAGAGAATGAGGTCAAGTACGGCCAAGGAAATAATACCGAGGCAGGGATGCAGTGGGAAGAAGATGCTGACCTCTCTTCATCTTCCGGACATGATTCTCAGATACCAAATCTCCATCTCTCAAATACGCAGCTGATGTCTGGTGAGATTCCACGTGCTACTTCTGATACTCAATCTGTGCAAACTACATCAGGTCCTTTGGATCAATCTGAAAGAGTTCACTCACTTCCCTATGTTGATCGAAAGCAACCAGGTCTTGAGAGTGATGATGAGATCAGAAGAGTGCCAGAGATTGGAGGTGAATCTGCTGGAACTTCAACCTCTCGTCGAGACACTGGTTCAACTGCTGGTCCGGAACGTATTCAGGGGGCAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCTGACAAAGAAAGCAAGCGGCTAAAGAGGCTACTAAGGAATAGAGTTTCAGCTCAGCAAGCACGGGAGAGGAAAAAGGCATACTTGATTGATTTGGAAACAAGAGTCAAAGACTTAGAAAAGAAGAATTCAGAGTTCAAAGAGAGACTCTCCACTTTACAGAATGAGAATCAAATGCTGAGACAAATATTGAAGAACACGACAGCAAGCAGGAGAGGGAGCAATAGTGGTACCAATAATGCTGAATGA 978 0.4397 MEQGGGVVNGSHERNELVKVKHGSDSGSKPLKNLNGQICQICGDTVGLTPTGDVFVACHECAFPLCHPCYEYERKNVSQSCPQCKTRYKSHKESPQVEGDDDEDDVDDLENEVKYGQGNNTEAGMQWEEDADLSSSSGHDSQIPNLHLSNTQLMSGEIPRATSDTQSVQTTSGPLDQSERVHSLPYVDRKQPGLESDDEIRRVPEIGGESAGTSTSRRDTGSTAGPERIQGAGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLIDLETRVKDLEKKNSEFKERLSTLQNENQMLRQILKNTTASRRGSNSGTNNAE* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03094 325 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 112 IPR013083 -
Rops11g03094 325 MobiDBLite consensus disorder prediction 114 145 - -
Rops11g03094 325 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Rops11g03094 325 MobiDBLite consensus disorder prediction 1 29 - -
Rops11g03094 325 Gene3D Single helix bin 268 309 - -
Rops11g03094 325 MobiDBLite consensus disorder prediction 209 223 - -
Rops11g03094 325 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 252 267 IPR004827 GO:0003700|GO:0006355
Rops11g03094 325 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 247 310 IPR004827 GO:0003700|GO:0006355
Rops11g03094 325 SUPERFAMILY Leucine zipper domain 249 307 IPR046347 GO:0003700|GO:0006355
Rops11g03094 325 CDD mRING-HC-C4C4_CesA 37 87 - -
Rops11g03094 325 MobiDBLite consensus disorder prediction 160 268 - -
Rops11g03094 325 MobiDBLite consensus disorder prediction 182 205 - -
Rops11g03094 325 Pfam bZIP transcription factor 246 307 IPR004827 GO:0003700|GO:0006355
Rops11g03094 325 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Rops11g03094 325 SUPERFAMILY RING/U-box 23 108 - -
Rops11g03094 325 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 163 322 IPR044280 GO:0000981|GO:0045944
Rops11g03094 325 MobiDBLite consensus disorder prediction 160 178 - -
Rops11g03094 325 FunFam Transcription factor HY5 268 309 - -
Rops11g03094 325 Coils Coil 323 325 - -
Rops11g03094 325 SMART brlzneu 245 309 IPR004827 GO:0003700|GO:0006355
Rops11g03094 325 MobiDBLite consensus disorder prediction 87 145 - -
Rops11g03094 325 FunFam Cellulose synthase A catalytic subunit 1 [UDP-forming] 22 112 - -
Rops11g03094 325 Coils Coil 244 313 - -
Rops11g03094 325 CDD bZIP_HY5-like 250 301 - -
Rops11g03094 325 MobiDBLite consensus disorder prediction 232 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03094 Rops-Chr11 55572681 55577964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03094 1 192 Glycosyltransferase AT4G32410 61.140 8.53e-62 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops11g03094 zf-UDP 1.6e-41 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03094 K10999 - aprc:113855639 563.148