Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03092 ATGGCATTCTTTAAGAACTTTTCACATGATGCAGTTTCACAAGGGGTATTGGAAGATAAAGGCCAAGAACAGAATGCCGATAGAATTTGTAGATCAGTAGGTAATGAAAGTGCTGATACAACTTCTAGTGAAAAAGAGTTTGATATGAACATGGAGGCACAGTACGAGAGTGATAGTGAACCAGATGGTGCCAGTAGCCTACAAAAGGAGGCAACTGCTGATGATCAAGTTGCTACAAGAGAATCAAAAGTGGAGACTATGAGCAGGAAAACTGCTACTGTTGGAAGGTGGGGTTCTTCATTTTGGAAGGACTGTCAGCCTATGCGCCCTCAGAATGGTTCTGAATCTGGGCACGAATCAAAAAGTGGATCGGACTATAGAAATGCAGATGAGTCTGAAGATAATTCATGGGAAGGAAGAGGGGAAAAATTAGACTCAGAAGATGATGATGGACAGAAGTATTCAGGAAAAGGTCTACGAGGCCATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAGAGTGACTCCTTGCATCACAGGGGTTTTCATCAACCTACTGGATCAAATTCGTGGCCTCAACGGAAGTCTACCATTGTCAATAGGGGTGTGCGTAAGAAATCTAGGATTTCTGATGATGCTGAGGATGATGTTGGTGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGACGCAGACTTTGAGCCTGCAACAAGTGGTCGTGCTTCAAACAAGGATAAAGATTGGGAAGGCGAAGACTCAGATGAAGCTGATGATAGTGATGAGGACATAGATGTCTCGGATAATGATGATTCTTACTTTGATAAGAAGGCTAAGGGAATGCAACGTGGTAAAATTGGACGAAGTGTAAGACCTACCAGAGATCGCAAATCATACACTGCATCCAGTCGACAAAGAAGAGTTAAATCATCTTTTGAATATGAAGATGTTGAGTCTACAGCAGAGGATTCTGGCAGTGAGAGTGACGAAGATTTCAAAAGCTTGAAAAAGAGAGGTGTGCATGCACGCAAGAATAGTGGTCGTTCATCTGCACCCAGAAGTTTTTCTATGCACAACAATGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGAGAAGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGATGATGGGGACTCCATTGAGAAGGTGCTCTGGCATCAGCCGAAGGGCATGGCTGCAGAGGCTCAAAGGAGTAATAGATCAGCAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCTGTACCTGATTGGAATGATATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGTTGAGTTGCAAAACCTCAGTGGTTTTAAGAAAGTTTTGAACTATACAAAGAAAGTGACAGAGGACATCAGGTACAGGATGAGATTCTCAAGAGAGGAGATTGAGGTCAACGATGTGAGTAAGGAGATGGATTTAGATATTATCAAAAAAAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAGAAGGACACTGATATTGCTTTTGCTCAACATGCTATTGATGAATATAAGGCTCGTGAGGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATCTTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGCGACTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCTGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCGTTGTCTACCTTATCGAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATACTATTGTCTATGTTGGTACTCGTGCAAGTAGAGAGGTTTGCCAACAATATGAATTCTATAATGATAAAAAGGCTGGCAGGCCAATAAAATTCAATGCACTGCTGACTACATATGAAGTAGTTCTGAAGGATAAGGCTGTTCTTTCCAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCGCAGTTGTATACAGCACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCACTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTACACTTCCTTGATTCTGATAAGTTCAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTAAGTTCATTCAACGAGAATGAGCTTGCTAATCTTCATACGGAATTGAGGCCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCTCCCAAAATTGAGCGTATTCTTAGGGTTGATATGTCTCCTCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTGGTAGAATTGAAGAAATGTTGTAACCATCCCTTCCTATTTGAAAGTGCTGACCATGGTTATGGTGGGGACTCCGAAAGTAGTGACATCAGTAAAGTTGAGAGAATTGTCTTTAGCAGTGGCAAACTTGTCATACTTGATAAGCTACTTGTCAGATTGCATGAAACAAGGCATCGTGTTCTGATTTTCTCTCAAATGGTAAGGATGTTAGATCTACTGGCAGAGTATATGTCGCTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGGGCAGGAGGTTTGGGTATCAACCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTTGACCACTTGGTAATCCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGTGGAAGTTATTTTGACAAAAATGAGCTGTCAGCAATCTTAAGATTTGGAGCTGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCTTAAGTATGGACATAGATGAGATTCTCGAAAGGGCAGAGAAGGTTGAAGAGAAGGAAAATGAGGGAGAGCAAGCACATGAGTTATTAAGTGCCTTTAAGGTTGCTAATTTCTGTAATGATGACGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCCGAAGCTGTTGCTCAAGCAGAGGGAGCTCTTGCTCCACGTGCTGCCAGGAATATTAAAAGCTATGCAGAGGAAAATCAATCTGAAAGAAGTAGTAAAAGAAAAAAGAAGGAAAGTGAACTGCCTGAACGAGTCCAGAAACGCCGGAAAGCAGAGTATTCAGCTCCTGCAATACCAATGATTGATGGAGCATCTGCCCAAGTGAGAAGCTGGTCATATGGGAATTTGTCTAAAAGAGACGCACTCCGTTTTTCTCGTTCAGTTATGAAATTTGGGAATGAGAGCCAAATCAACTTAATTGCTGCGGAGGTTGGTGGTGCAGTAGGAGCAGCTCCACTTGAAGCACAAACTGAACTCTTCAATGCTCTAATTGATGGCTGTACAGAAGCAGTGGAACTTGGAAGTCTAGATCCCAAGGGGCCTTTATTAGATTTCTTTGGTGTCCCAGTGAAGGCAAATGATTTACTTACACGAGTTCAAGAACTTCAACTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAATTCCGTGTCTTAACATATCTCAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGACGCAAGATTGCTTCTTGGAGTACATTATCATGGATTTGGTAATTGGGAAAATATAAGATTAGATGAAAAGCTTGGTCTTATGAAGAAAATTGCACCAGTGGAGCTTCAACACCATGAAACCTTCTTGCCACGAGCTCCGAATTTGAGAGACCGTGCAAATGCCCTGTTGGAGCAGGAACTTGCTGCTCTTGGTGTGAAAAATGCCCATAGCAAAGTTGGAAGAAAGACTTCCAAGAAAGAGAGAGAACATCTTGTGGACATCTCATTGTCCCGTGGGCAGGAGAAAAAGAAAAATTTGGGTTCTAAAGTTAATGTCCAAATGAGAAAGGAAAGACTTCAGAAACCTCTAAAAGTTGTACCTATTGTGAAAGAGGAGGGTGAAATGTCTGATGATGAGGAAGTATATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAGGATGTGATGGTTGAAGAGATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCAAAAATCCGCAGCTACTTGCAGCTTCTTGGGCGAAGGATTGATCAAATTGTGTTAGAACATGAAGCGGAACCGTATAAGCAAGATAGAATGACGATGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCTGGAGAGAGGCTTCATCAAATATATTCAAAACTTAAACTGGAGCAGAATGTGGCAGGGGTTGGCACCTCTCATGCTAATGGGTCAGTATCTGGTCCATTTAGCAGGAATGGAAACCATAACCATTCTTATCCTATGGAGAGGCAAAGAGGATACAAAAATGTGACTACCTACCAAATGCCAGAACCAATTAATAACACTGGCATGTCTGAGGCATGGAAACGAAGAAGAAGAACTGAAAGTAATGGTCATTTCCAGGGTCAGCCACCACCTCAAAGAATCACGAGTAATGGAATTCGGATTTCGGATCCTAATTCACTGGGGATCCTTGGGGCTGGACCATCTGACAGACGTTTAGTTAGTGAGAGACCATTTAAGTCTTGA 5217 0.4133 MAFFKNFSHDAVSQGVLEDKGQEQNADRICRSVGNESADTTSSEKEFDMNMEAQYESDSEPDGASSLQKEATADDQVATRESKVETMSRKTATVGRWGSSFWKDCQPMRPQNGSESGHESKSGSDYRNADESEDNSWEGRGEKLDSEDDDGQKYSGKGLRGHSDVPAEEMLSDEYYEQDGEEQSDSLHHRGFHQPTGSNSWPQRKSTIVNRGVRKKSRISDDAEDDVGADYEEEDEADEDDPDDADFEPATSGRASNKDKDWEGEDSDEADDSDEDIDVSDNDDSYFDKKAKGMQRGKIGRSVRPTRDRKSYTASSRQRRVKSSFEYEDVESTAEDSGSESDEDFKSLKKRGVHARKNSGRSSAPRSFSMHNNEVRTSSRTVRKVSYVESEESEEADEEKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAAEAQRSNRSAEPVLMSHLFDSVPDWNDMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKVTEDIRYRMRFSREEIEVNDVSKEMDLDIIKKNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDTDIAFAQHAIDEYKAREAAMSVQGKMVDLQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNTIVYVGTRASREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTALSEFSTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDDFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSESSDISKVERIVFSSGKLVILDKLLVRLHETRHRVLIFSQMVRMLDLLAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKENEGEQAHELLSAFKVANFCNDDDDGSFWSRWIKPEAVAQAEGALAPRAARNIKSYAEENQSERSSKRKKKESELPERVQKRRKAEYSAPAIPMIDGASAQVRSWSYGNLSKRDALRFSRSVMKFGNESQINLIAAEVGGAVGAAPLEAQTELFNALIDGCTEAVELGSLDPKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGFGNWENIRLDEKLGLMKKIAPVELQHHETFLPRAPNLRDRANALLEQELAALGVKNAHSKVGRKTSKKEREHLVDISLSRGQEKKKNLGSKVNVQMRKERLQKPLKVVPIVKEEGEMSDDEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRSYLQLLGRRIDQIVLEHEAEPYKQDRMTMRLWKYVSTFSHLSGERLHQIYSKLKLEQNVAGVGTSHANGSVSGPFSRNGNHNHSYPMERQRGYKNVTTYQMPEPINNTGMSEAWKRRRRTESNGHFQGQPPPQRITSNGIRISDPNSLGILGAGPSDRRLVSERPFKS* 1739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03092 1738 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 83 1669 - -
Rops11g03092 1738 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 632 804 IPR014001 -
Rops11g03092 1738 SMART helicmild6 966 1050 IPR001650 -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 385 417 - -
Rops11g03092 1738 FunFam protein CHROMATIN REMODELING 5 isoform X2 530 582 - -
Rops11g03092 1738 Pfam SNF2-related domain 639 908 IPR000330 GO:0005524|GO:0140658
Rops11g03092 1738 Gene3D - 851 1081 IPR027417 -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 360 384 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 105 119 - -
Rops11g03092 1738 Gene3D - 400 527 - -
Rops11g03092 1738 FunFam Photoperiod-independent early flowering 1 590 864 - -
Rops11g03092 1738 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Rops11g03092 1738 SUPERFAMILY Chromo domain-like 412 495 IPR016197 -
Rops11g03092 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 528 592 IPR000953 -
Rops11g03092 1738 SMART DUF4208_2 1518 1623 IPR025260 -
Rops11g03092 1738 CDD CD2_tandem 529 582 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 1210 1239 - -
Rops11g03092 1738 Gene3D - 611 850 IPR038718 -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 1 417 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 59 73 - -
Rops11g03092 1738 Gene3D - 530 582 - -
Rops11g03092 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1126 IPR027417 -
Rops11g03092 1738 CDD SF2_C_SNF 926 1061 - -
Rops11g03092 1738 ProSiteProfiles Chromo and chromo shadow domain profile. 415 494 IPR000953 -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 120 169 - -
Rops11g03092 1738 SUPERFAMILY Chromo domain-like 507 583 IPR016197 -
Rops11g03092 1738 SMART ultradead3 616 815 IPR014001 -
Rops11g03092 1738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 607 841 IPR027417 -
Rops11g03092 1738 Pfam Chromo (CHRromatin Organisation MOdifier) domain 529 583 IPR023780 -
Rops11g03092 1738 CDD CD1_tandem 413 493 - -
Rops11g03092 1738 Coils Coil 1134 1161 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 190 207 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 225 246 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 264 282 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 1211 1239 - -
Rops11g03092 1738 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 940 1091 IPR001650 -
Rops11g03092 1738 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 851 1081 - -
Rops11g03092 1738 Gene3D - 1347 1462 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 1694 1714 - -
Rops11g03092 1738 SMART chromo_7 445 496 IPR000953 -
Rops11g03092 1738 SMART chromo_7 526 585 IPR000953 -
Rops11g03092 1738 Coils Coil 1080 1100 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 1684 1738 - -
Rops11g03092 1738 Coils Coil 388 408 - -
Rops11g03092 1738 MobiDBLite consensus disorder prediction 283 329 - -
Rops11g03092 1738 Pfam Domain of unknown function (DUF4208) 1530 1622 IPR025260 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03092 Rops-Chr11 55523347 55560709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03092 642 1077 RAD5 or RAD16-like Gene Family AT1G02670 26.535 2.87e-35 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g03092 SNF2_N 9e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03092 K11367 - gmx:100808039 2808.48