Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03090 ATGACAAGTGCGATCCTCAGAAGTTCCGCTTCCATATTCTCATGGCGCTTCTTCGCCGCCGTCACCTCCGTCGAGCCGCTTCTGCACCGCCTCGCCTCCTCCTGCGCCGTGTCTCGCCGGAACGGTGTCTCCGGCCAAGGAGCAAGGGCCTTTCACGCGAAATCTGGACCGTTGAACTTCCACTCGTCGCTGGTTTCTCGTGCTGCGCAGCATGCTGTAGTTCACGATTACGCGCACGAATATGAAGGTTCCAGTGCGAACGGCGATGAAGGACTTGAGATCGCGAAGCTTGGGATCTCTCAGGAGATCGTGGATGCTCTTGCCAAGAAAGGGATCGCGAAGCTCTTCCCCATTCAGAAAGCTGTGCTGGAACCTGCGATGCAAGGGCGTGATATGATTGGTCGAGCTAGAACGGGAACCGGGAAAACTCTTGCTTTTGGGATACCCATCTTGGATAAGATTATTCAGTTTAATGCTAAGCATGGGCGAGGAAAGGATCCTTCGGCTTTAGTTTTGGCTCCAACCAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTTAATGAGGCTGCACCTAACTTGGACACAATTTGTCTTTATGGGGGTATGCCTATCAATCAACAAATGAGCCAGCTTAATTTTGGCGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTCAAGAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTGGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGATGTGGAGAAGATCTTGGAGAAGTTACCTCCAAATCGTCAGACTCTTATGTTCTCAGCGACAATGCCATCTTGGATAAAGAATATTACCCGCAATTACCTAAACAACCCCCTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTGTACTCTATTGCATCTAATGCATACGTTAAAGCGGGAATTCTTGCACCTCTAATAACAGAACATGCTAAAGGAGGGAAATGTATTGTTTTCACTCAAACCAAACGCGATGCTGATCGGTTATCATATATAATGGCAAAAAGCCTTAAGTGTGAGGCCTTGCATGGAGATATTTCGCAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACTATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGACTTGATATTCCAAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTCCATCGATCTGGACGAACGGGACGTGCTGGGAAGAAAGGAACTGCCATTCTTGTTTACACACAAGATCAATTCAGGGCAGTGCAGACTATTGAGCGTGATGTTGGATGTAGATTTACACAGCTACCAAAGATTGAAGTTGAAAGTGGATCAGCAGACAAGTTTGGTGGATTGAGTGGCGGTCGATTTGGCCCTACAGAAGGTATGAGGGATCGTCGATCCGGTGGTGGTCCTGGATTTGGCCGTTCTGGGAGTTACAGTAACCCTGGATTTGGCCGAACTAGCTCTGGAAAATCTGGTGAGATGGGAAGGTTTGGTGGGCAATATTCTAGTCGTTTTGGTGGCCCTGGTTCAAAGCAGTCAGGAGGGGGGTTTGGGGGATTTTCTGGTAATTCTTCTGGTGAAATGGGTAAATATGGTGGACCAAACTCTGGTCATTATGGTTCCTTTGGTTCAGGTAGTGGTTTTGGTGCTTCTGGGGATAACCCAAATAATGATCGTTACAATAGAGGAAGGCTATTTGAACTTCTCGCATCTTGCCTAATCTCCATATCACTTGACATGGAGAGAGTTATGGCATAA 1842 0.4631 MTSAILRSSASIFSWRFFAAVTSVEPLLHRLASSCAVSRRNGVSGQGARAFHAKSGPLNFHSSLVSRAAQHAVVHDYAHEYEGSSANGDEGLEIAKLGISQEIVDALAKKGIAKLFPIQKAVLEPAMQGRDMIGRARTGTGKTLAFGIPILDKIIQFNAKHGRGKDPSALVLAPTRELARQVEKEFNEAAPNLDTICLYGGMPINQQMSQLNFGVDIAVGTPGRIIDLLKRGSLNLKDVQFVVLDEADQMLQVGFQEDVEKILEKLPPNRQTLMFSATMPSWIKNITRNYLNNPLTIDLVGDSDQKLADGISLYSIASNAYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYIMAKSLKCEALHGDISQAQRERTLAGFRNNYFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTQDQFRAVQTIERDVGCRFTQLPKIEVESGSADKFGGLSGGRFGPTEGMRDRRSGGGPGFGRSGSYSNPGFGRTSSGKSGEMGRFGGQYSSRFGGPGSKQSGGGFGGFSGNSSGEMGKYGGPNSGHYGSFGSGSGFGASGDNPNNDRYNRGRLFELLASCLISISLDMERVMA* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03090 613 CDD SF2_C_DEAD 323 440 - -
Rops11g03090 613 Pfam Helicase conserved C-terminal domain 326 431 IPR001650 -
Rops11g03090 613 CDD DEADc 103 298 - -
Rops11g03090 613 FunFam ATP-dependent RNA helicase RhlE 84 300 - -
Rops11g03090 613 Pfam DEAD/DEAH box helicase 116 285 IPR011545 GO:0003676|GO:0005524
Rops11g03090 613 SMART helicmild6 351 431 IPR001650 -
Rops11g03090 613 Gene3D - 93 301 IPR027417 -
Rops11g03090 613 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 297 IPR014001 -
Rops11g03090 613 MobiDBLite consensus disorder prediction 476 549 - -
Rops11g03090 613 SMART ultradead3 111 314 IPR014001 -
Rops11g03090 613 Gene3D - 318 475 IPR027417 -
Rops11g03090 613 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 470 IPR001650 -
Rops11g03090 613 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 93 464 - -
Rops11g03090 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 452 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03090 Rops-Chr11 55409672 55417498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03090 97 463 Eukaryotic Initiation Factors Gene Family AT3G19760 32.615 6.50e-65 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03090 - - gmx:100802553 832.402