Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03088 ATGAAGGTGGTCGGAGAAGCACTCGCTAGAGCAGTTGTAGGTGCTGGTGCAGGGGGAGGGGGAGATTTGGTTGGGGATGAGCTCACTGGAACAAGAGAAGGTGGAGAGCTTACTGGTGGTGTCGCCGTCGGAGGTTTGGTCGCCGTAGCAGACGCCACAACTTTGGTCGGAGATGAAGCTGATGGAGGAGATAATTTGGGAAGCGTTGGCATGCGAGGAAAGGATCCTTTGGCTTTAGTTTTGGCTCCAACCAGAGAACTTACGCGGCAGGTTGAGAAGGAATTTAATGAGGCTGCGCCTAACTTGGACACAATTTGTCTTTATGGGGGTATGCCTATCAATCAACAAATGAGCCAGCTTAATTTTGGCGTAGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTCAAGAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTGGATGAAACTGATCAGATGCTTCAAGTAGGATTTCAAGAAGATGTGGAGAAGATCTTGGAGTTACCTCCAAATCGTCAGACTCTTATGTTCTCAACGACAATGCCATCTTGGATAAAGAATATTACTCGCAATTACCTAAACAACCCCCTGACCATTGATCTTGTAAGTATGCAAATCTTATTTAGGCACCAAGAGAAGAAAGCATATTACAGTTTTCAAAAGTAA 684 0.4518 MKVVGEALARAVVGAGAGGGGDLVGDELTGTREGGELTGGVAVGGLVAVADATTLVGDEADGGDNLGSVGMRGKDPLALVLAPTRELTRQVEKEFNEAAPNLDTICLYGGMPINQQMSQLNFGVDIAVGTPGRIIDLLKRGSLNLKDVQFVVLDETDQMLQVGFQEDVEKILELPPNRQTLMFSTTMPSWIKNITRNYLNNPLTIDLVSMQILFRHQEKKAYYSFQK* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03088 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 71 205 IPR027417 -
Rops11g03088 227 CDD DEADc 72 206 - -
Rops11g03088 227 SMART ultradead3 19 219 IPR014001 -
Rops11g03088 227 Gene3D - 59 209 IPR027417 -
Rops11g03088 227 Pfam DEAD/DEAH box helicase 74 193 IPR011545 GO:0003676|GO:0005524
Rops11g03088 227 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 76 206 - -
Rops11g03088 227 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 205 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03088 Rops-Chr11 55397945 55400545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03088 78 205 Eukaryotic Initiation Factors Gene Family AT3G13920 41.985 3.42e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03088 - - gmx:100802553 240.736