Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03080 ATGATGACACAGGCAACACTACCTTCTCCATCTTCCTTCACAGACTGTGATTGGCCTAATGATGTCTTCCTCAACTTTAGAGGTGAAACTTGCGAAAAGTTCACTAGTGATCTCTACGATTCTCTTCAGAAAAAGGGTATCAACACCTTTATCGACGATAAAGGGCTTAGGAGAGGAGAAGTAATCACGCCAGCTCTTCTCCAAGCCATTAAACGATCCAGGATTTTCATTTCTATTTTCTCCAACGACTATGCATCCTCAACATATTGTTTGGAGGAACTTGTCACGATCCTTGAATGCCTGGAGACACCAGGAAGGTCTGAAACAGAATATCAGTTAATATCAAAGATAACTGACGAGGTCTCTAAAAAAATCAACCGCATTCCTTTACATGTTGCTAAAGTACCAATTGGGCTGGAATCTCGAGTTTCAGAAGTGACATCTCTCCTAGGACTTGAGTCTTATGAGGGAGTCAACATGGTAGGCATTTATGGAATCGGTGGAGTAGGTAAATCAACAGTTGCTCGTGCTGTGCATAACTTGATTGCGGATCAATTTGATGGTTTGTGTTTTCTCACTGACACAAGAAGAAGGGCAAATAGTGATCATGATCTTGCACAACTCCAACAAACACTACTTAATGAAATACTCGACGACCAAGATATTAAAGTGAGAGATGTTTACATGGGAATTTCAATAATAAAAAAGAGGCTTCAGCAAAAGAAGGTCCTTTTGATTCTTGATAATGTTGACAAACTGAAACAGCTGGAGGCACTCGCGGGAGGACATGATTGGTTTGGCTCTGGTTATGTGGATGTTTCAAAGCGTGCAGTTTTTTATACTGATGGCCTTCCATTGGCTTTGGAGGTGATTGGTTCTTACTTGTTTGGCAAAAGTTTAGATGTGTGGAAATCTGCATTAGAGAAGTATAAAAGAGTTCTTCCTAGAGAGATCCATGAAATACTTAGAGTTACCTATGATGATTTGGAAGAAGATGAGAAGGATATTTTTCTTGACATCGCTTGTTTCTTCAATGCTTATGAAATGGGCTATGTCAAAGGAATGCTATGCTTACATGGTTTTCATGTGGAAAATGGCATTCAAGTGCTGACCGACAAATCACTCATAAAAATTGGCAATGATTGTGTGAGAATGCATGACTTAATTCAACACATGGGCAGAGAAATTATAAGGCAGGAATCCACATGGGAGCCTGACAGGTGCAGTAGATTATGGCTTAATGAGGATATTGTTCATGTCTTGGAAGATAATACGGTGTCAAAGTCGAAGTCGTTGCGCTTTCTGGATTTTGGAGGCTGCAAGTTCCTAACTGAACTACCTAGTTTATCTGGAGCTCCAAATCTGGGGGCACTGTGTCTTGATAATTGCACTAATTTAGTTAGAATCGATGCCTCGGTTGGGTTTCTTGATAGACTCGTGTTATTGAGTGCTCGAGAATGCACCCAACTAGAAATTTTGGTGCCGTGTATCAACTTGAGATCTCTAGAGACTTTGGATCTTACGGGTTGCTCAAGTCTTGAGAGCTTCCCAGAAGTAGTGGGAGTGATAGAGAATACAAGAGAGGTTTATTTAGACCAGACTGCCATACAAGAATTGCCACTTTCAATTGGAAATCTTGTTGGGCTCCAACGATTGTTCCTGAGGAGATGCCAAAGGCTGATCCAGCTACTATGTAGCGTCTACAATTTGCCTAAACTTGAGATAATAATGGCTTATGATCGTGAGGTATTTCGACCATATGAAGATGAAGGAAAGGTGAGCTCAATAGTGTTTTCAAATACCATGTATGTTTCTAATATACATGGGGAGTTCTTGCTTGATACATATTCTCTGAATATAAGCCCCAATAATGTCATAGAAGTATGTAATCCCCATCAGCTTGCGGATCATGAAGTTTTTATATCCCGGAAGATAGTGGGTTTATATTCGCAAAAGTCAGTATGTTTTAGGTTCCGAAACAAATTCCCCAGAATTGGTCTACGTTGTGATGCATGGCCTAACATGTATTATAAAGATATGGCGTTGGATTTCAAGTTCAGTGTACTCGTCAATGGTTCTAAGCAATTCAGTTCTTCATGTAACTACTTTTGTTATACAGAAACTGTGACGAAGCAAAGACTTAGGTGGGAACTACAATGCAGAGTGGAGGAGGATGAAGATGGTGTGCGTTGGCTTGGATCCGGATCCCCTCATGTTGAATTTCAACATGAGGGGATCCATTCCCGCGTTGGCTCTGCTTTCTCTTTAGTTTTCTTCAATTGA 2283 0.4052 MMTQATLPSPSSFTDCDWPNDVFLNFRGETCEKFTSDLYDSLQKKGINTFIDDKGLRRGEVITPALLQAIKRSRIFISIFSNDYASSTYCLEELVTILECLETPGRSETEYQLISKITDEVSKKINRIPLHVAKVPIGLESRVSEVTSLLGLESYEGVNMVGIYGIGGVGKSTVARAVHNLIADQFDGLCFLTDTRRRANSDHDLAQLQQTLLNEILDDQDIKVRDVYMGISIIKKRLQQKKVLLILDNVDKLKQLEALAGGHDWFGSGYVDVSKRAVFYTDGLPLALEVIGSYLFGKSLDVWKSALEKYKRVLPREIHEILRVTYDDLEEDEKDIFLDIACFFNAYEMGYVKGMLCLHGFHVENGIQVLTDKSLIKIGNDCVRMHDLIQHMGREIIRQESTWEPDRCSRLWLNEDIVHVLEDNTVSKSKSLRFLDFGGCKFLTELPSLSGAPNLGALCLDNCTNLVRIDASVGFLDRLVLLSARECTQLEILVPCINLRSLETLDLTGCSSLESFPEVVGVIENTREVYLDQTAIQELPLSIGNLVGLQRLFLRRCQRLIQLLCSVYNLPKLEIIMAYDREVFRPYEDEGKVSSIVFSNTMYVSNIHGEFLLDTYSLNISPNNVIEVCNPHQLADHEVFISRKIVGLYSQKSVCFRFRNKFPRIGLRCDAWPNMYYKDMALDFKFSVLVNGSKQFSSSCNYFCYTETVTKQRLRWELQCRVEEDEDGVRWLGSGSPHVEFQHEGIHSRVGSAFSLVFFN* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03080 760 SMART AAA_5 157 307 IPR003593 GO:0016887
Rops11g03080 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 340 IPR027417 -
Rops11g03080 760 Gene3D - 116 276 IPR027417 -
Rops11g03080 760 Pfam TIR domain 21 102 IPR000157 GO:0007165
Rops11g03080 760 SUPERFAMILY L domain-like 403 577 - -
Rops11g03080 760 PRINTS Disease resistance protein signature 160 175 - -
Rops11g03080 760 PRINTS Disease resistance protein signature 497 513 - -
Rops11g03080 760 PRINTS Disease resistance protein signature 237 251 - -
Rops11g03080 760 Pfam NB-ARC domain 154 258 IPR002182 GO:0043531
Rops11g03080 760 Gene3D Ribonuclease Inhibitor 407 608 IPR032675 -
Rops11g03080 760 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 103 IPR035897 -
Rops11g03080 760 ProSiteProfiles TIR domain profile. 18 150 IPR000157 GO:0007165
Rops11g03080 760 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 431 574 IPR044974 GO:0006952
Rops11g03080 760 Gene3D - 15 109 IPR035897 -
Rops11g03080 760 SMART till_3 19 138 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03080 Rops-Chr11 55085788 55097960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03080 137 543 WRKY Transcription Factor Family AT5G45050 27.440 7.10e-39 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03080 - - cill:122278677 418.313