Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03077 ATGCTAAGCATGGGTTGGCGAGGAAAGGATCCTTCGGCTTTAGTTTTGGCTCCAACCAGAGAACTTGCGCGGCAGGTTGAGAAGGAATTTAATGAGGTTGCACCTAACTTGGACACAATTTGTCTTTATGGGGGTATGCCTATCAATCAACAAATGAGCCAGCTTAATTTTGGCGTAGATATTGCAGTTGACACACCTGGTCGAATTATTGATCTTCTCAAGAGGGGTTCACTGAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTTCGCTGAACTCTATTGCATCTAATGCATACGTTAAAGCGAGAATTCTTGCACCTCTAATAACAAGGGAAAGAACTCTTGCTGGCTTCAGAAACAACTATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGACTTGATATTCCAAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTCCATCGATCTGGACGAACGGGACGTGCTGGGAAGAAAGGAACTGCCATTCTTGTTTACACAGAAGATCAATTCAGGGCAGTGCAGACTATTGAGCGTGATGTTGGATGTAGATTTACGCAGCTACCAAAGATTGAAGTTGAAAGTGGATCAGCAGACAAGTTTGGTGGATTGAGTGGCGGTCGATTTGGCCCTACAGAAGGTATGAGGGATCGTCGATCCGGTGGTGGTCCTGGATTTGGCCGTTCTGGGAGTTACAGTAACCCTGGATTTGGCCGAACTAGCTCTGGAAATTCTGGTGAGATGGGAAGGTTTGGTGGGCAATATTCTAGTCGTTTTGGTGGCCCTGGTTCAAAGCAGTCAGGAGGGGGGTTTGGGGGATTTTCTGGTAATTCTTCTGGTGAAATGGGTAAATATGGTGGACCAAACTCTGGTCATTATGGTTCCTTTGGTTCAGGTCAACCAGAAACTCAATCTGGGGTAAATTCTCGCCCAAGTGGTTTTGGGGGTTTTGGTAGTTCAGATCGTTCCAGTGGCTTTGGTTCTTAA 1074 0.4423 MLSMGWRGKDPSALVLAPTRELARQVEKEFNEVAPNLDTICLYGGMPINQQMSQLNFGVDIAVDTPGRIIDLLKRGSLNLKDVQFVVLDEADQMLQVGDSDQKLADGISLNSIASNAYVKARILAPLITRERTLAGFRNNYFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQFRAVQTIERDVGCRFTQLPKIEVESGSADKFGGLSGGRFGPTEGMRDRRSGGGPGFGRSGSYSNPGFGRTSSGNSGEMGRFGGQYSSRFGGPGSKQSGGGFGGFSGNSSGEMGKYGGPNSGHYGSFGSGQPETQSGVNSRPSGFGGFGSSDRSSGFGS* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03077 357 MobiDBLite consensus disorder prediction 322 357 - -
Rops11g03077 357 CDD DEADc 7 98 - -
Rops11g03077 357 SMART helicmild6 102 186 IPR001650 -
Rops11g03077 357 CDD SF2_C_DEAD 130 195 - -
Rops11g03077 357 SMART ultradead3 1 158 IPR014001 -
Rops11g03077 357 MobiDBLite consensus disorder prediction 231 357 - -
Rops11g03077 357 Gene3D - 3 113 IPR027417 -
Rops11g03077 357 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 105 IPR014001 -
Rops11g03077 357 Pfam DEAD/DEAH box helicase 9 102 IPR011545 GO:0003676|GO:0005524
Rops11g03077 357 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 203 IPR027417 -
Rops11g03077 357 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 8 102 - -
Rops11g03077 357 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 72 225 IPR001650 -
Rops11g03077 357 MobiDBLite consensus disorder prediction 262 280 - -
Rops11g03077 357 Gene3D - 114 207 IPR027417 -
Rops11g03077 357 Pfam Helicase conserved C-terminal domain 129 186 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03077 Rops-Chr11 55036293 55044855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03077 126 218 Eukaryotic Initiation Factors Gene Family AT3G19760 39.785 2.28e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03077 - - gmx:100786041 409.838