Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03075 ATGGTCTTTCACGACTCCGAGAAACACTACTTCATGAAATACTTGCAGAGAATGATAAAAAGGAGGCTCCTACGAATGAAGGTCCTTTTGATTCTTGATGATGTTGACAAATTGAATCAGTTAGAGGTACTTGCAGGAGATCATGATTGTTTCGGCTATGGTAGTAGGATCATAATCACAACAAGAGACAAACATCTGCTGGCCGCTCATGGGGTTGAGAAATTATACGAGGTTAAAATGTTAAATGGTGAAACAGCTCATGAGTTGTTTAGTTGGCATGCCTTTAAAAATAACAAAATTGATCCAGATTATGTGGATATTTCAAAATGTGCTGTATTTTATGCTTATGGCCTTCCATTGGCTTTGGAGGTTATAAGCTCTCTCCTGCTTGGCAAAAGTTTAAATGTATGGAAATACACATTAGACAAGTATGAAAGAATTCTTCATAAAGTGATCCATGAAATACTTAAAATTACCTATGATGATTTGGGAGAAGATGAGTATACTTTTTTTGACATCGCATTTTCATTCACCTCATACAAAATGGACAATGTCAATGAAATGCTATACTCACATGGTTTTCAATCAAAAAATATCATTAAAGTGTTGATTGACAAATCTCTCATAAAAATTGATGGCAATGGTTGTGTGAGAACGCATGACTTAATACAAGAAATGGGCCAAGAAATTGTAGGCAGAGAAATCGCAAGGCAGGAATCAACATTGGAGCCTGACAGATGCAGTAGATTACGGTTTCATGAGTACGTTGTTCATGTTTTGGAAAATGATACGCCAACATTACCTTCTCCAGCTTCCTGCACCCGTGATTGGCCTTATGATGTCTTCCTCAACTTTAGAGGTTTCGATAACGGTGACAATTTCACTGGTAATCTCTACAATTCTCTTCAGCAAAAGGGTATCCACACCTTCATGGACCGAGAAGAACTCAGGATAGGAGAAGAAATCATGCCAGCTCTTCTGCAAGCCATTAAAGAATCCAGGATTTTCGTTGCTGTTTTCTCCAATAACTATGCATCCTCGACATATTTTTTGGATGAACTTGTCATGATCCTTGAGTGCTGCCTGAAGGGAAAAGGACGGTTGTTTTTGCCGGTTTTTTATGATGTGGATCCATCACAAGTTCGGCACCAAAGAGGTACCTATGCAGAAGCTTTGGCAAAACATGAGGAGAGGTTTCAGGATGACAAGGACAAGGTGTGA 1221 0.3874 MVFHDSEKHYFMKYLQRMIKRRLLRMKVLLILDDVDKLNQLEVLAGDHDCFGYGSRIIITTRDKHLLAAHGVEKLYEVKMLNGETAHELFSWHAFKNNKIDPDYVDISKCAVFYAYGLPLALEVISSLLLGKSLNVWKYTLDKYERILHKVIHEILKITYDDLGEDEYTFFDIAFSFTSYKMDNVNEMLYSHGFQSKNIIKVLIDKSLIKIDGNGCVRTHDLIQEMGQEIVGREIARQESTLEPDRCSRLRFHEYVVHVLENDTPTLPSPASCTRDWPYDVFLNFRGFDNGDNFTGNLYNSLQQKGIHTFMDREELRIGEEIMPALLQAIKESRIFVAVFSNNYASSTYFLDELVMILECCLKGKGRLFLPVFYDVDPSQVRHQRGTYAEALAKHEERFQDDKDKV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03075 406 Pfam NB-ARC domain 11 155 IPR002182 GO:0043531
Rops11g03075 406 SMART till_3 278 405 IPR000157 GO:0007165
Rops11g03075 406 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 260 IPR044974 GO:0006952
Rops11g03075 406 PRINTS Disease resistance protein signature 22 36 - -
Rops11g03075 406 PRINTS Disease resistance protein signature 115 129 - -
Rops11g03075 406 SUPERFAMILY "Winged helix" DNA-binding domain 152 233 IPR036390 -
Rops11g03075 406 Gene3D - 4 74 IPR027417 -
Rops11g03075 406 ProSiteProfiles TIR domain profile. 277 406 IPR000157 GO:0007165
Rops11g03075 406 SUPERFAMILY Toll/Interleukin receptor TIR domain 270 396 IPR035897 -
Rops11g03075 406 Gene3D - 80 164 IPR042197 -
Rops11g03075 406 Pfam TIR domain 279 402 IPR000157 GO:0007165
Rops11g03075 406 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 167 IPR027417 -
Rops11g03075 406 Gene3D - 272 406 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03075 Rops-Chr11 54995497 54997734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03075 18 262 WRKY Transcription Factor Family AT5G45050 33.603 2.07e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03075 - - mtr:11440666 313.538