Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03073 ATGATGACACAGCCAACACTACCTTCTCCATCTTCCTTCACAAACTGTGATTGGCCTTATGATGTCTTCCTCAATTTTAGAGGTGAAACTCGCGAAAAGTTCACTAGTGATCTCTACGATTCTCTTCAGAAAAAGGGTATCCACACATTCATCGACGATAAAGAGCTTAGGAGAGGAGAAGTAATCACGCCAGCTCTTCTCAACGCCATTAAAGAATCCAGGATTTTCGTTTCTGTTTTCTCCAACGACTATGCATCCTCAACATATTGTTTAGAGGAACTTGTCACGATCCTTGAATGCCTGAAGACACCTGGAAGGTTATTTTTGCCTGTCTTTTATGGAGTGGATCCATCACAAGTTCGGCACCAAAGAGGGACCTACGCAGAAGCTTTGGCAGCACATGAGGTGAGGTTTCAGGATGACAAGGACAAGGTTCAAAAATGGAGGGGTGCTTTACGTCAAGCTGCAGAGTTCTCTGGCTGGCATTTTCAACCTGGGTCTGAATCAGAATATCAGTTTATAACAAAGATCACTGACGAGGTCTCTAAAAAGATCAAGCGCATTCCTTTACATGTTGCGAATAACCCAGTTGGACTGGAATCTCCAGTTTCGAAAGTGACATCTCTCTTAGAACGTGATTCTGATGAGAGAGTCAGCATGGTAGGCATTTATGGAATCGGTGGAATAGGAAAATCAACAATTGCTCGTGCAGTGCGTAACTTGGTTGCCGATCAATTTGATGGTTTGTGTTTTCTCGCTGACATAAGAAGAAGGGCTAGTAGTGATCATGATCTTGCACAACTCCAAGAAACACTACTTAATGAAATACTCGACGACCAAGATATTAAAGTGAGAGATGTTTACCTGGGAATTTCAATAATAAAAAAGAGGCTCCAGCGAAAGAAGGTCCTTTTAATTCTTGATAATGTTGACAAGCTGAAACAGCTGGAGGTACTCACGGGAGGACATGATTGGTTTGGCTATGGCAGCAAGATCATAATCACAACAAGAGACAAGCATTTGCTTGACAATCATAGGGTTGTGAAATTATACAAGGTTGAACCTTTCAATGGCGATAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAAAATAACAAAATTGATCCAGGTTATGAGGATATTTCAAAAAGTGCAGTTTCTTATGCCCATGGCCTTCCATTGGCTTTGGAGGTGATTGGTTCTCACTTGTTTGGCTATCATTTGAATGTATGGGAATCTGCATTAGAAAAGTATAAAAAAATTCCTCCTGAAGAGATCCACAAAATACTTAGAGTTAGCTATGATGATTTAGAAGAAGATGAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCTTACGAAATGGGCTATGTCAAAGAAATGCTATCCTTACATGGTTTTCATGTGGAAAATGGCATTCAAGTGTTGACTGACAGATCACTCATAAAAAATGATGGCAATGGTTGTGTGAGAATGCATGACCTAATTCAAGACATGGGCAGAAAAATTGGATCTGATACTATTGAAGTCATGATTGTCGACTTGTGCAAAGACAAAGAAGTGCTATGGAGTGGAGAAGCTTTCAAGAAGATGAAAAACCTGAAAATTCTTATTATCCGAAATGCACGTTTTTCACAAGGCCCTCAAAATCTACCAAATAGTTTGAGAGTGTTGGACTGGAGTGGATATCCATCACCATCTTTACCATCTGATTTTAATCACAGGAATCTTGTGATTCTCAGCCTACCTGAAAGTTGCCTTAAATTGTTCAAATTACTCAAGGCATGTTTTCCAAGAATTTTTGTGTCAAAGTCGACGTCGTTGTGCTTTCTGGATTTTGGAGGCTGCAAATTCCTAACTGAACTACCTAGTTTATCTGGAGCTCCAAATCTGGGGGCACTGTGTCTTGATAATTGCACTAATTTAGTTAGAATCGATGGCTCGGTTGGGTTTCTTGATAGACTCGTGTTATTGAGTGCTCAAGGATGCACCCAACTTGAAATTTTGGTACCCTGTATCAACTTGAGATCTCTAGAGACTTTGGATCTTAGGGGTTGCTCACGTGTTGAGAGCTTCCCAGAAGTACTGGGAGTGATGGAGAATACAAGAGTGGTTGATTTAGATGAGACTGCCATACAAGAATTGCCACTTTCAATTGGAAATCTTGTTGGGCTCCAACGATTGTCCCTGAGGGGATGCCAAAGGCTGATTAAGCTACCAAGTAGCGTCTACAAATTGCCTAAACTTGAGATAATAACGGCTTATGGTCTTAGGGGATTGCGACCATATGAAGATAAAGGAAAGGTGAGCTCAATAGTGTTTTCAAATACCATGCATGTTTCTAATATACATGGGGAGTTCTTGCTTGATATATATTCTCTGAATATAAGCCCCAATAATGTCATAGAAGTATGTAATCCCCATCAGCTTGCGGATCATGGATCTTTACCCTCGTATCTAGCGGTTTTTGATTTGATCAAGCCCGTAGGCAAGCAACAGTCAGTATGTTTTAGGTTCCGAAACAAATTCCCCAGAATTGGTCTAAGTTGTGAGGCAAGGCCTAGCATGGATTATAACGATATGGTGTTGGATTTCAAGTTCAGTGTACTCGTCAATGGTACTAAGCAATTCAGTTCTTCATGTAACTACTTATGTTATAAACGAACCGTGACGAACCAAACACTTTGGTGGGAACTACAATGCAAATGCAGAGTGGAGGAGGTATTTTCGGACCATGAATGGAATCAAGTGGAGATTTTATGTGAGATGGAATCTCCCACTACAGGGAATCTAAAGTTGTTCCTCGATTATGCCTTCATAGAAAATGAGGAGGACTTCAAATGTGAAAATGATGAACCCCCATCTCAAATAATAAGTGTTAAACAGTTGTTGGATATCATATCAGCGGACACCATATTTTTCACAAAGGAAGTACATAGACTGGTTTTATTGGCGAAGTGGAATAGAGAATTGTCCAAGAGAACGAGAGTGTCCAGCTCTCACAACATCGAAGAAGAGGATGTGGGAAATGTAGATGAACCACTAAGGATGCTTTCCCTTGATCAAAACCACTAA 3084 0.403 MMTQPTLPSPSSFTNCDWPYDVFLNFRGETREKFTSDLYDSLQKKGIHTFIDDKELRRGEVITPALLNAIKESRIFVSVFSNDYASSTYCLEELVTILECLKTPGRLFLPVFYGVDPSQVRHQRGTYAEALAAHEVRFQDDKDKVQKWRGALRQAAEFSGWHFQPGSESEYQFITKITDEVSKKIKRIPLHVANNPVGLESPVSKVTSLLERDSDERVSMVGIYGIGGIGKSTIARAVRNLVADQFDGLCFLADIRRRASSDHDLAQLQETLLNEILDDQDIKVRDVYLGISIIKKRLQRKKVLLILDNVDKLKQLEVLTGGHDWFGYGSKIIITTRDKHLLDNHRVVKLYKVEPFNGDKALELFSWHAFKNNKIDPGYEDISKSAVSYAHGLPLALEVIGSHLFGYHLNVWESALEKYKKIPPEEIHKILRVSYDDLEEDEKGIFLDIACFFNSYEMGYVKEMLSLHGFHVENGIQVLTDRSLIKNDGNGCVRMHDLIQDMGRKIGSDTIEVMIVDLCKDKEVLWSGEAFKKMKNLKILIIRNARFSQGPQNLPNSLRVLDWSGYPSPSLPSDFNHRNLVILSLPESCLKLFKLLKACFPRIFVSKSTSLCFLDFGGCKFLTELPSLSGAPNLGALCLDNCTNLVRIDGSVGFLDRLVLLSAQGCTQLEILVPCINLRSLETLDLRGCSRVESFPEVLGVMENTRVVDLDETAIQELPLSIGNLVGLQRLSLRGCQRLIKLPSSVYKLPKLEIITAYGLRGLRPYEDKGKVSSIVFSNTMHVSNIHGEFLLDIYSLNISPNNVIEVCNPHQLADHGSLPSYLAVFDLIKPVGKQQSVCFRFRNKFPRIGLSCEARPSMDYNDMVLDFKFSVLVNGTKQFSSSCNYLCYKRTVTNQTLWWELQCKCRVEEVFSDHEWNQVEILCEMESPTTGNLKLFLDYAFIENEEDFKCENDEPPSQIISVKQLLDIISADTIFFTKEVHRLVLLAKWNRELSKRTRVSSSHNIEEEDVGNVDEPLRMLSLDQNH* 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03073 1027 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Rops11g03073 1027 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Rops11g03073 1027 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 449 IPR027417 -
Rops11g03073 1027 SUPERFAMILY "Winged helix" DNA-binding domain 426 508 IPR036390 -
Rops11g03073 1027 Pfam TIR domain 20 187 IPR000157 GO:0007165
Rops11g03073 1027 SUPERFAMILY L domain-like 510 804 - -
Rops11g03073 1027 PRINTS Disease resistance protein signature 297 311 - -
Rops11g03073 1027 PRINTS Disease resistance protein signature 220 235 - -
Rops11g03073 1027 PRINTS Disease resistance protein signature 676 692 - -
Rops11g03073 1027 PRINTS Disease resistance protein signature 390 404 - -
Rops11g03073 1027 Gene3D - 356 434 IPR042197 -
Rops11g03073 1027 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 769 IPR044974 GO:0006952
Rops11g03073 1027 Pfam NB-ARC domain 200 436 IPR002182 GO:0043531
Rops11g03073 1027 Gene3D Ribonuclease Inhibitor 676 806 IPR032675 -
Rops11g03073 1027 Gene3D Ribonuclease Inhibitor 525 675 IPR032675 -
Rops11g03073 1027 Gene3D - 435 505 IPR036388 -
Rops11g03073 1027 SMART till_3 19 158 IPR000157 GO:0007165
Rops11g03073 1027 Gene3D - 182 350 IPR027417 -
Rops11g03073 1027 Gene3D - 16 181 IPR035897 -
Rops11g03073 1027 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03073 Rops-Chr11 54954165 54957889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03073 20 771 WRKY Transcription Factor Family AT4G12020 30.189 1.48e-82 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03073 - - mtr:11415136 1162.13