Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03071 ATGACACAGCCAACACTACCTTCTCCGTCTTCCTTCACCTGTGATTGGACTTATGATGTCTTCCTCAACTTTAGAGGTGTCGATACCCGCCAAAATTTCACCACTGATCTCTACGATTGTCTTCAGCAAAAGGGTATCCACACCTTCATCGATGATGAAAAGCTTGGGAGAGGAGAAGAAATCACGCCTGCTCTTCTCCAAGCCATTAAAGAATCCAAGATCTTCATTGCTGTTTTCTCCAACAACTATGCATCCTCAACATATTGTTTGGAGGAACTTGTCACGATCCTTGAGTGCATAAAGACACCAGGACGGTTGTTTTTGCCAGTTTTCTATGACGTGGATCCATCACAAGTTCGGCACCAAAGAGGGACCTATGCAGAAGCTTTAGAAAAACATGAGGAGAGGTTCAAGGATGACAAGGACAAGGTTCAAAAATGGAGGGATGCTTTACGCCAAGCTGCTGATGTATCTGGCTGGCATTTCCAACACGGAATTGAAGTCATATTTGTCAATTTCAACTACGGAGACAAAGAAGTGCTATGGAGTGGGGAAGCTTTCAAGAAGATGAAAAACCTGAAAATTCTTGTTATCCAAAATGCACGCTTTTCACAAGGCCCTCAAAATCTACCAAATAGTTTGAGAGCGTTAGAATGGATTGGTTATCCATCATGGTCTTTACCATTTGATTTTAATCCCAGTAATCTGGTGATGCTCAACCTACCTGATATTTGCATTATGTCATTCAAATCACTCGAGGTGTTTGAGTCATTGAGATTTCTGAATTTTGGAGGTCATGAGTTCTTAATTGAACTACCTAGTTTATCTGGGTTACCAAATTTGGGGTCATTGTATCTAGATGATTGCACTAATTTAATTAGGATCCATGACTCGGTTGGGTTTCTTGATAGACTCTTGTTATTGAGCGCTCGAAGATGCTTCCAACTACAAACTGTTGTACCCTCTATCAACTTGACATCTCTAAAGACTTTGAATCTTACCGATTGCTATTGTCTTAAGAGCTTCCCAGAAGTATTGGGAGTGATGGAGAATATAAGAGTGGTTTACTTAGACTGGACTGCAATAGAAGAATTGCCACTTTCAATTGGAAATCTTGTTGGGCTCGAACGATTGTTCCTGAGAGAATGCACAAATTTGATCCAGCTACCAAGTAGCATCTACATGTTGCCTAATCTTGAGATAATAACGGCTTATGGTTGTAAGGGATTCCGAATATCTGAAGATAAAGAAAGAGTGATCTCAAAAGTGTTTCCAAAGGTTATGTTTGTTTATGATTGGTGTGTGAGGTCCTTCCTTGACATGTATTATCATAATATAAGCCCCAATAATCTCATAGAAGTATGCAGTCCTTCGTGGAACCCCTCCTGTCACCATCTTGAGAGGCATTTACAATGGAGAGAAGATTGGATAAAATTCCGGACCAAGCAACCATCTGTGGGTTTTTGTTTCCGAAAGAAATTCCCCACGATAGGTCTACTTTGTGTTGCAAATCCTGGCATGGATTATAATAACACGATAGTGTTTGATTTCCAGTTTAGTGTACTCATCAATGGCACTAAGCAATTCAGTTCTTGGTGTAACTGCATAGATCATTCAAAGGAGCTACATTTTTTCTGTGATCTACGATGCAAAGTAGAGGGGGTATTTTCAGAGCATGAATGGAATCAAGTGGAGATTTTATGTGAGATGAAATATCCCTGTTCATGTTGTTCTAATAGGGTAACGACAGGGACCACTACGGGTACTATAAATGAGGTGTGTATTTATTTCTACTTAGATAACAACAAGGAGGATTTGAAAATTCCGATCTCCCTCCCCCAAAAATTTAATGTCGAAATCTAG 1863 0.3999 MTQPTLPSPSSFTCDWTYDVFLNFRGVDTRQNFTTDLYDCLQQKGIHTFIDDEKLGRGEEITPALLQAIKESKIFIAVFSNNYASSTYCLEELVTILECIKTPGRLFLPVFYDVDPSQVRHQRGTYAEALEKHEERFKDDKDKVQKWRDALRQAADVSGWHFQHGIEVIFVNFNYGDKEVLWSGEAFKKMKNLKILVIQNARFSQGPQNLPNSLRALEWIGYPSWSLPFDFNPSNLVMLNLPDICIMSFKSLEVFESLRFLNFGGHEFLIELPSLSGLPNLGSLYLDDCTNLIRIHDSVGFLDRLLLLSARRCFQLQTVVPSINLTSLKTLNLTDCYCLKSFPEVLGVMENIRVVYLDWTAIEELPLSIGNLVGLERLFLRECTNLIQLPSSIYMLPNLEIITAYGCKGFRISEDKERVISKVFPKVMFVYDWCVRSFLDMYYHNISPNNLIEVCSPSWNPSCHHLERHLQWREDWIKFRTKQPSVGFCFRKKFPTIGLLCVANPGMDYNNTIVFDFQFSVLINGTKQFSSWCNCIDHSKELHFFCDLRCKVEGVFSEHEWNQVEILCEMKYPCSCCSNRVTTGTTTGTINEVCIYFYLDNNKEDLKIPISLPQKFNVEI* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03071 620 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 160 IPR035897 -
Rops11g03071 620 SMART till_3 17 157 IPR000157 GO:0007165
Rops11g03071 620 SUPERFAMILY L domain-like 177 456 - -
Rops11g03071 620 ProSiteProfiles TIR domain profile. 16 155 IPR000157 GO:0007165
Rops11g03071 620 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 173 - -
Rops11g03071 620 Gene3D Ribonuclease Inhibitor 320 468 IPR032675 -
Rops11g03071 620 Coils Coil 130 150 - -
Rops11g03071 620 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 167 IPR044974 GO:0006952
Rops11g03071 620 Pfam TIR domain 18 153 IPR000157 GO:0007165
Rops11g03071 620 Gene3D - 12 179 IPR035897 -
Rops11g03071 620 Gene3D Ribonuclease Inhibitor 180 319 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03071 Rops-Chr11 54845628 54849170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03071 187 407 WRKY Transcription Factor Family AT4G12020 35.714 3.56e-31 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03071 - - mtr:11440666 450.284