Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03070 ATGGCACCATATCATGCTGTGGAGAGAGGGTTAGAGGGTTGCACTTGGAGTGCTGAGGGGCAAGGTGGGATTTTGGACACAATGGCCGACGACGACTACAATGACCTTGACATGGGATATGAAGATGAGCCACCAGAGCCTGAGATTGAAGAAGGTGCAGAGGAGGATTTGGATAACAACGATAACAATGATGACATGACTGGAGAGCCTCTTGAAACTGAGGAAAAGGAAGGACAACAACCGGCAGAGAGGCCTCGAAAGACATCGAAATATATGACCAAGTATGAGCGTGGCAGGATTTTGGGTACCCGAGCTCTTCAAATCAGTATGAATGCTCCTGTCATGGTTGAATGGGAAGGGGAGACTGACCCTCTTGAGATTGCCACGAAGGAGCTTCGAGAGCGGAAGATACCCTTTACCATCCGTCGCTACTTGCCTGATGGAAGCTATGAAGATTGGGGAGTTGATGAACTGATAGTGGAAGATTCCTGGAAGAGGCACGGAGTGGCAGCTGTGACTCGACTTGGCATTGAGGTTGCACTGGTGGTTGGTGGGGGTAACATCATCCGTGGATCCTCATGGGCTGGAGGTGACTCGGGCATCGCACGAGGAGGTCGAGCGGTTCGAACGACTCATGCCACAACCGAGAAGCTTATTGAGATATATGAAGATAAGGACAATGCAAGGGAGGATGAGATTGCTGCACTGGGAGGTCAAACTGCTTCCGGAGTTAATGTTTTTAGTTCCTTCTACGATGGACTCAAAGAGATACTTCAAATGAAACTTTCGAATGCTGGTGGAAGGCTTATTATAGCCTCTGATGATATTTGGGTTGCTTTATCTTTTGATTTGGCTGCCAAGTCTTGTCGGGGTCATGGGTGA 882 0.4887 MAPYHAVERGLEGCTWSAEGQGGILDTMADDDYNDLDMGYEDEPPEPEIEEGAEEDLDNNDNNDDMTGEPLETEEKEGQQPAERPRKTSKYMTKYERGRILGTRALQISMNAPVMVEWEGETDPLEIATKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRHGVAAVTRLGIEVALVVGGGNIIRGSSWAGGDSGIARGGRAVRTTHATTEKLIEIYEDKDNAREDEIAALGGQTASGVNVFSSFYDGLKEILQMKLSNAGGRLIIASDDIWVALSFDLAAKSCRGHG* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03070 293 PIRSF RPB6 28 162 IPR028363 GO:0003899|GO:0005634|GO:0005665|GO:0006351
Rops11g03070 293 MobiDBLite consensus disorder prediction 17 90 - -
Rops11g03070 293 MobiDBLite consensus disorder prediction 72 90 - -
Rops11g03070 293 Gene3D - 30 162 IPR036161 GO:0003677|GO:0003899|GO:0006351
Rops11g03070 293 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT K 28 161 - -
Rops11g03070 293 SMART RNA_pol_Rpb6_2 86 139 IPR006110 GO:0003677|GO:0003899|GO:0006351
Rops11g03070 293 SUPERFAMILY RPB6/omega subunit-like 28 161 IPR036161 GO:0003677|GO:0003899|GO:0006351
Rops11g03070 293 Pfam RNA polymerase Rpb6 88 139 IPR006110 GO:0003677|GO:0003899|GO:0006351
Rops11g03070 293 MobiDBLite consensus disorder prediction 30 71 - -
Rops11g03070 293 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC2 27 162 - -
Rops11g03070 293 PIRSF RpoK/RPB6 28 162 IPR006111 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03070 Rops-Chr11 54589081 54606910 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03070 203 275 C2H2 Transcription Factor Family AT5G06160 56.164 1.10e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03070 K03014 - cave:132181323 224.172