Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03061 ATGACTGGTCCTGGTTCTCCTTGTGGAGCCTGTAAATTCTTGCGAAGGAAGTGTGTGAGAGGTTGTGTTTTTGCACCTTATTTTTGTCATGATCAACTATATACCCATTTTCCAGCCATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCCCATCTCCCTGTGAGTGATCGTTATGAAGCTGCACTTACTATCTCATATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGCTGTGTTGCCCATATTTTTGCACTCGACAACAGGTGGTCAATTTACAAGCACAGCTAG 303 0.4323 MTGPGSPCGACKFLRRKCVRGCVFAPYFCHDQLYTHFPAIHKVFGASNVSKLLAHLPVSDRYEAALTISYEAQARLQDPIYGCVAHIFALDNRWSIYKHS* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03061 100 ProSiteProfiles LOB domain profile. 6 100 IPR004883 -
Rops11g03061 100 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 92 - -
Rops11g03061 100 Pfam Lateral organ boundaries (LOB) domain 7 96 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03061 Rops-Chr11 54373314 54373720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03061 1 93 AS2 family AT2G42440 76.344 9.02e-52 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Rops11g03061 LOB 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03061 K13945 - gmx:100805623 174.866