Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03056 ATGAATTATGCATCCTCAACATATTGTTTGGATGAACTTGTCATGATCCTTGAGTGCTTGAAGACACAAGGACGATTGTTTTTGCCAGTTTTTTATGATGTGGATCCATCACAAGTTCGGCACCAAAGAGGGACCTATGCAGAAGCTATGGCCAAACATGAGGAGAGGTTTCAGGATGACAAGGACAAAGTACAAGAATGGAGGGATGCTTTACGTCAAGCTGCTAACGTGTCTGGCTGGCATTTCCAACACGGGTCTCAATCAGAATATAAGTTTATTAGAAAGATTGTTGAAGTGGTATTTGGAAAGATCAACCGCACTCCATTACATGTTGCTAATAACCCAGTTGGGCTGGATTCTACAGTTTTAGAAGTGACATCTCTAGTAGGAGTAGGGTCGGATGAGAGGGTCAACATGGTAGGCATTTATGGAATCGGTGGAATAGGTAAATCGACAGTTGCTCGTGCTGTGCATAACTTGATTGCTGATCAATTTGAAGGTTTGTGCTTTCTTGCTAACATAAGAGAAAGGGCAAGCAATCACGGTCTTCCACAACTCCAAGAAACACTACTTAATGAAATACTTGCGGAGAAAGATATTAAAGTGGGAGATGTTTACAAAGGAATTTCAATAATAAAAAAGAGGCTACATCAAAAGAAGGTCCTTTTGATTCTTGATGATGTTGAGAAACTGAAACAGTTACAGGTACTTGCAGGAGGACATGATTGGTTTGGCTCTGGCAGCAGGATCGTAATTACAACAAGAGACATGCATTTGCTGGCCACTCATGGGGTTGTGAAATTATATGAGGTTAAACCGTTGAATGGTGAAAAAGCTCTTGAATTGTTTAGTTGGCATGCCTTTAAAAATAACAAAATTGGTCCAGGTTATGAGAATATTTCAAAACGTGTAGTTTTTTATGCTCATGGCCTTCCATTGGCTTTGGAGGTTATAGGCTCTCACCTGTTTGCCAAAAGTTTGGATGTATGGAAATCTGCATTAGATAAGTATAAAAGAATTCTTCATAAAGAGATCCATGGAATACTTAAAGTTACCTATGATAATTTGGAAGAAGATGAGAAGGGTATTTTTCTTGATATGGCTTGTTTCTTCAATTCTTATGAAATGGGTCATGTTAAAGAAATACTATACTTACATGGTTTTCATGTGGAAAATGGCATTCAAGTGTTGACCGACAAATCACTCATAAAAATTGATGGAAAAGGTTGTGTGAGGATCCATGACTTAATTCAAGACATGGGCAGAGAAATTGTGTTTGAGTTGTTGAGCTTTCTAGATTTTGAAGGCTGCAAGTTCTTAACTGAACTACCTAGTTTATCTGGGGTAGCAAATTTGGGGGCATTGTGTCTTGATTATTGCACTAATTTAATTAGAATCCATCGCTTGATTGGGTTTCTTGATAGACTCATGTTATGGAGTGCTCAAGGATGCACCCAACTAGAAATTTTGGTACCCTGTATCAACTTGAGATCTCTAGAGACTTTGGTTCTTAGGGGTTGCTCACGTCTTGAGGGCTTCCCAGAGGTATTGGGAGTGATGGAAAATATAAGAGAGATTTATTTAGACCAAACTGCCATAGAAGAATTACCGCTTTCAACTGGAAATCTTGTTGGGCTCCAACAATTGTTCTTGAGGGAATGCCAAAGGTTGATCCAGCTACCAAGTAGCATCTACATGTTGCCTAAACTTGAGATAATAACGGCTTATGGTTGCAGGGGATTTCGACCATCTGAAGATAAAGAAAAAGTGAGCTCAAAAGTATTTCCAAACGCCATGCATGTTTCTTATGTACAGGGGGAGTTCTTGCTTAATATGTATTCTCAGAATATAAGCCCCAATATTATCATAGAAGTACGTAGAACGTCGTTGAATACCCGCTGGTGTGATGACCATCAGCTTGTATATCATGAATTTGAAAAATGGCTTTTGCAAGAGAGGGTAGATTGGAACAAGCTCCGAAGTAAGCAATCATCTTTGTGTTTTTGGTTCCGAAAGAAATTCCCCATAATAGGTCTCTGTTGTGATGCAAAACCTGGCATGTATAATAACAATATGGTGTTGGATTTCAAATTCAGTGTACTCATTGATGGTACTAAGCAATTCTGTTCTTCATGTAACTACATATTTTATGCACGGAGAATGACAGACCAAAAACTTCGGTGGGAATTACAATGCAAGGTGGAGGGGGTATTTTCAGAGCTTGAATGGAATCAAGTGGAGATTTCATGTGAGATGGAATACCCCTAG 2268 0.3898 MNYASSTYCLDELVMILECLKTQGRLFLPVFYDVDPSQVRHQRGTYAEAMAKHEERFQDDKDKVQEWRDALRQAANVSGWHFQHGSQSEYKFIRKIVEVVFGKINRTPLHVANNPVGLDSTVLEVTSLVGVGSDERVNMVGIYGIGGIGKSTVARAVHNLIADQFEGLCFLANIRERASNHGLPQLQETLLNEILAEKDIKVGDVYKGISIIKKRLHQKKVLLILDDVEKLKQLQVLAGGHDWFGSGSRIVITTRDMHLLATHGVVKLYEVKPLNGEKALELFSWHAFKNNKIGPGYENISKRVVFYAHGLPLALEVIGSHLFAKSLDVWKSALDKYKRILHKEIHGILKVTYDNLEEDEKGIFLDMACFFNSYEMGHVKEILYLHGFHVENGIQVLTDKSLIKIDGKGCVRIHDLIQDMGREIVFELLSFLDFEGCKFLTELPSLSGVANLGALCLDYCTNLIRIHRLIGFLDRLMLWSAQGCTQLEILVPCINLRSLETLVLRGCSRLEGFPEVLGVMENIREIYLDQTAIEELPLSTGNLVGLQQLFLRECQRLIQLPSSIYMLPKLEIITAYGCRGFRPSEDKEKVSSKVFPNAMHVSYVQGEFLLNMYSQNISPNIIIEVRRTSLNTRWCDDHQLVYHEFEKWLLQERVDWNKLRSKQSSLCFWFRKKFPIIGLCCDAKPGMYNNNMVLDFKFSVLIDGTKQFCSSCNYIFYARRMTDQKLRWELQCKVEGVFSELEWNQVEISCEMEYP* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03056 755 PRINTS Disease resistance protein signature 139 154 - -
Rops11g03056 755 PRINTS Disease resistance protein signature 215 229 - -
Rops11g03056 755 PRINTS Disease resistance protein signature 308 322 - -
Rops11g03056 755 PRINTS Disease resistance protein signature 494 510 - -
Rops11g03056 755 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 80 IPR035897 -
Rops11g03056 755 ProSiteProfiles TIR domain profile. 1 100 IPR000157 GO:0007165
Rops11g03056 755 Gene3D - 274 352 IPR042197 -
Rops11g03056 755 Gene3D - 353 423 IPR036388 -
Rops11g03056 755 SUPERFAMILY L domain-like 412 578 - -
Rops11g03056 755 Pfam NB-ARC domain 137 353 IPR002182 GO:0043531
Rops11g03056 755 Gene3D - 108 267 IPR027417 -
Rops11g03056 755 SMART AAA_5 136 274 IPR003593 GO:0016887
Rops11g03056 755 Pfam TIR domain 2 106 IPR000157 GO:0007165
Rops11g03056 755 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 429 584 IPR044974 GO:0006952
Rops11g03056 755 Gene3D - 1 107 IPR035897 -
Rops11g03056 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 366 IPR027417 -
Rops11g03056 755 Coils Coil 50 70 - -
Rops11g03056 755 Gene3D Ribonuclease Inhibitor 424 590 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03056 Rops-Chr11 54147165 54150450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03056 439 582 WRKY Transcription Factor Family AT5G45050 31.293 9.69e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03056 - - mtr:11441658 658.677