LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g03055	ATGATGACACAGCCAACACTACCTTCTCTGTCTTCCTTCACAAACTGTGATTGGAATTATGATGTCTTCCTCAACTTTAGAGGTGTTGATACTCGCGAAAAGTTCACTACTGATCTCTACGATTCTCTTAAGAAAAAGGGTATCCGCACATTCATCGACGATAAAGAGCTTAGGAGAGGAGAAGTAATCACGCCAGCTCTTCTCAAAGCCATTAAAGAATCCAGGATTTTCATTGCTGTTTTCTCCAAGAACTATGCATCCTCAACATATTGTTTGGAGGAACTTGCCACGATCCTTGAATGCTTGAAGACACCAGGAAGGTTATTTTTGCCTGTTTTTTATGGAGTGGAGCCAACACAAGTTCGGCACCAAAGAGGGACCTACGCAGAAGCTTTGGCAGCACATGAGGTGAGGTTTCAGGATGACAAGGACAAGGTTCAAAAATGGAGGGATGCTTTACGTCAAGCTGCAGGAGTGTCTGGCTTGCATTTCAAACACGAGTCTGAATCAGAATATCAGTTTATAACAAAGATCACTGATGAGGTCTCTAAAATGATCAACAACCGCATTCCTTTACATGTTGCTAAAGTACCAGTTGGGCTGGAATCTCGAGTTTCAGAAGTGAAATATCTCCTAGGACTCGAGTCTCATGAGGGAGTCAACATGGTAGGCATTTATGGAATCGGTGGAATAGGTAAATCAACAGTTGCTCGTGCTGTGCATAACTCGATTGCCGATCAATTTGAAGGTGTGTGTTTTCTCGATGACATAAGAGTAAGGGCAAGTAGTGATCATGGTCTTGCACAACTCCAAGAAACACTACTTAATGAAATACTCGACGACCAAGATATTAAAGTGAGAGATGTTTACATGGGAATTTCAATAATAAAAAGGAGGCTCCAGCGAAAGGTCCTTTTGATTCTTGATAATGTTGATGAGCTGAGACAGCTGGAGGTACTCGCTGGAGGACATGATTGCAAGATCATAATCACAACAAGAGACAAGCATCTGCTGGTCAATCATGGGGTTGTGAACTTATACGAGGTTCAACTGTTGAATGATGAAAAGGCTCTTGAATTGTTTAGTTGGCATACCTTCAAAAGTAACGAAGTTAATCCAGATTATTTGGATGGTTCAAAACTTGCAGTTTCTTATGCTAATGGCCTTCCATTGGCTTTGGAGGTGATTGGTTCTTACTTGTGTGGCAGAAGTTTGGATGTATGGAAATCTGCATTAGATAAGTATGAAAGAGTTCTTCCTAGAAAGATCTATGAAATACTTAAAGTTAGCTATGATGATTTGGAAGAAGATGAGAAGGGTATTTTTCTTGACATCGCTTGTTTCTTCAATTCTGAAGAAATCGGCTATGTCAAAGAAATACTATACTCACATGGTTTTCATGCGGAAAATGGAATTCAAGTGTTGATTGACAAATCTCTCATAAAAATTGATGGCAATGGTCGGGTGAGGATGCATGACTTAATTCAAGACATGGGCAGAGAAATCGTAAGGCAGGAATCAACATTGGAGCCTGGCAGACGCAGTAGATTATGGTGTAAGGAGGACATTGTTCATGTTTTGGAAGAAAATACGGGATCTGATACAATTGAAGCCATAATTGTCGACTTGTGCAAAGACAAAGAAGTGTTAGAGTCGTTGTGCTTTCTGGATTTTGGAGGCTGCAAGTTCCTAACTGAACTACCTACTTTATCTGGAGTTCCAAATTTGGGGGCACTGTGTCTTGATTATTGCACTAATTTAATTAGAATCCATCGCTCAGTTGGATTTCTTGATAGACTCATGTTATTGAGTGCTCAAGGATGCACCCAACTAAAATTTTTGGTCCCCGGTATCAACTTGAGATCTCTAGAGACTTTGGATCTTAGGGGTTGCTCACGTCTTGAGAGCTTCCCAGAAGTATTGGGAATGATGGAGAGTATAAGATATGTTTATTTAGACGAGACTGCCATACAAGAATTGCCACTTTCAATTGGAAATCTTGTTGGGCTCCAACGATTGTTCCTGAGGGAATGCCAAAGTCTGATCAAGCTACCAAGTAGCATCTACATGTTGCCTACACTTGAGATAATAACGGCTTATGGTTGTGGGGGATTTCGACCATATGAAGATAAAGTAAAGGTGAGCTCAATGGTGCTTTCAAATACCATGCAAGTTTCTAATATAGATGGGGAGTTCTTGCCTGATATATATTCTCTGAATATAAGCCCCAATAATTTCATAGAAGTACGTAATCCTATCAGCTTGCGGATCATGGATCTTTGCCCTCGTGTGAAGATTTTTTTGGTTTGA	2310	0.4043	MMTQPTLPSLSSFTNCDWNYDVFLNFRGVDTREKFTTDLYDSLKKKGIRTFIDDKELRRGEVITPALLKAIKESRIFIAVFSKNYASSTYCLEELATILECLKTPGRLFLPVFYGVEPTQVRHQRGTYAEALAAHEVRFQDDKDKVQKWRDALRQAAGVSGLHFKHESESEYQFITKITDEVSKMINNRIPLHVAKVPVGLESRVSEVKYLLGLESHEGVNMVGIYGIGGIGKSTVARAVHNSIADQFEGVCFLDDIRVRASSDHGLAQLQETLLNEILDDQDIKVRDVYMGISIIKRRLQRKVLLILDNVDELRQLEVLAGGHDCKIIITTRDKHLLVNHGVVNLYEVQLLNDEKALELFSWHTFKSNEVNPDYLDGSKLAVSYANGLPLALEVIGSYLCGRSLDVWKSALDKYERVLPRKIYEILKVSYDDLEEDEKGIFLDIACFFNSEEIGYVKEILYSHGFHAENGIQVLIDKSLIKIDGNGRVRMHDLIQDMGREIVRQESTLEPGRRSRLWCKEDIVHVLEENTGSDTIEAIIVDLCKDKEVLESLCFLDFGGCKFLTELPTLSGVPNLGALCLDYCTNLIRIHRSVGFLDRLMLLSAQGCTQLKFLVPGINLRSLETLDLRGCSRLESFPEVLGMMESIRYVYLDETAIQELPLSIGNLVGLQRLFLRECQSLIKLPSSIYMLPTLEIITAYGCGGFRPYEDKVKVSSMVLSNTMQVSNIDGEFLPDIYSLNISPNNFIEVRNPISLRIMDLCPRVKIFLV*	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops11g03055	769	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	707	IPR044974	GO:0006952
	Rops11g03055	769	ProSiteProfiles	TIR domain profile.	18	186	IPR000157	GO:0007165
	Rops11g03055	769	FunFam	Disease resistance protein (TIR-NBS-LRR class)	16	188	-	-
	Rops11g03055	769	Pfam	TIR domain	19	186	IPR000157	GO:0007165
	Rops11g03055	769	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Rops11g03055	769	PRINTS	Disease resistance protein signature	386	400	-	-
	Rops11g03055	769	PRINTS	Disease resistance protein signature	298	312	-	-
	Rops11g03055	769	PRINTS	Disease resistance protein signature	618	634	-	-
	Rops11g03055	769	PRINTS	Disease resistance protein signature	222	237	-	-
	Rops11g03055	769	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	445	IPR027417	-
	Rops11g03055	769	SMART	till_3	19	159	IPR000157	GO:0007165
	Rops11g03055	769	Pfam	NB-ARC domain	208	421	IPR002182	GO:0043531
	Rops11g03055	769	Gene3D	-	14	186	IPR035897	-
	Rops11g03055	769	SMART	AAA_5	219	352	IPR003593	GO:0016887
	Rops11g03055	769	SUPERFAMILY	"Winged helix" DNA-binding domain	422	528	IPR036390	-
	Rops11g03055	769	Gene3D	-	351	435	IPR042197	-
	Rops11g03055	769	Gene3D	Ribonuclease Inhibitor	532	763	IPR032675	-
	Rops11g03055	769	SUPERFAMILY	L domain-like	546	748	-	-
	Rops11g03055	769	Gene3D	-	187	345	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g03055	Rops-Chr11	54124647	54134708	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g03055	19	713	WRKY Transcription Factor Family	AT4G12020	29.235	9.06e-66	236

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g03055	-		-	mtr:11415136	803.897