Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03050 ATGTGGAGGATGTTGCATCCTTATTCAGTTCTGTGTCATGCACCTATGAAGCACTATGCTGATGGTTTTTCAAGTCAGCCCAAAAGGCATCTGCTAACTACAGGGTGGAGTGTCTTTGTCAGTGCTAAGAGGCTTGTTGCTGGTGATTCAGTCATTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGTATACGGAGAGCAAATCATCCAGAGACTGTCATGCCATCATTGGTTCTGTCATGTGATAGCATGTACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAATTGCCGCTTTACTATATTCTACAATCCTAGGGCATGCCTATCAGAATTTGTCGTTCCATTGGCCAAATATGTTAAAGCTGTGTATCATACACAAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTCCGCCGATACATGGGTACTATAACTGGTATTAGTGATTTAGATCCTGTCCGCTGGCCTAATTCACACTGGCATTCTGTGAAGTCCACTGCTGGGGAGAAGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCGTTGTCAACATTCCCTATGTATCCTTCTCCATTTCCGTTGAGGTTGAAGCGCCCCTGGCCATCAGAACTACCTTATTTCCATGGTCTAAAGGATGGTAACATGAGCATTAGTTCTCCATTAATATGGCTCCAAGGTGGGCTTGAGGATCAAGGAACACAATCTTTGAACTTCCAGGGGCTTGGGGTTACACCACAGGTGCAACCAAGATTTGATACACCCATACCTGGTCGCCAACCAGAGATATACCAAGCAATGGCTGCTGCTGCACTGCAGGAAATGAGGTCGATGGATCCATCAAAATCTTCTTCCCAACCTCCGTTGCTGTTTCAGCAGCCTTCAAATGTTCCCAGTGCTCCTACATCTGTACTACAGAAACAAGTATTGCCGCACCCAAATACCCTTCTACACAATCTTCAAGAAAACAAGTTTCCTGTCCAGTCACAACTTCTGCAACAACAGTTGGCCCGATACCACCCATATAGCGATCAGCGGCAACAGCAACTTAAAATTTTTCCTGTTCAGCAGCAGATACCAAATGTCATATCTCCTTTGTCTAATTTTGCATCTGCTACTCAGCCTCAATCTCTGTCCATTCAACCCCTAGTTTCAGATGGCCAGCAGCAGAGCTTTCCTAAACCGGTCAGGAATCATATTTCCAGCTCTGACGTTTCCCCTATCCAGAGTCTTTTAGGTTCATTCTCCGAGGATGGAGCATCCCAGTTACTTAACTTGAATGGATCCAATTCCATTTTGTCTCCTGCTTCCTTACTACCCAAGCAAATAAATGTCGAACCCCAGTTTCCATCTGCTGCTGGTCAGTGTGTATTGCCCCGGGTGGAAAACTCAGAAACATCACATTCTGAACTTAGTGCTTTGCCTCCATTTCCTGGAAGAGAATATTCTATGTACCATGGATCTGCTGATCCTCAGAGCAATCTTTTGTTCAGTGTTAACATTGATTCATCTTCTCTTATGCTGCAAAATGACATGCCAAACCTAAGAAATGTAGGAAATGAGAATGATTCATTGTCATTGCCATTTTCTGCTTCAAATTTTGGTGGTGCTACAGGCACTGATATTCCCCTTAGTTCAGACATGACAGCTTCAAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAATTGTAGACCAAGCAAATACACCAACTGGAACCTTTGTGAAGGTTCACATGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTCGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAATGATATTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAGTATGTGGTACATCATGATACTGTCTCCACTTGAAGTGCAACAAATGTTCCAAGGTCTAAGTCCTTCTACTTCTACCACAGGACACAAGCTTTGTGCTACTGGAAACTCTTGTGATAATTATGTGAGCCTACAAGATTTTAGAAGTCCAAGCAATTGCATTGCTTCAATGGGGTCTCTTGACTACCAAAATAACCTGCTTGCAAGGAATGGTAATTAA 2190 0.4425 MWRMLHPYSVLCHAPMKHYADGFSSQPKRHLLTTGWSVFVSAKRLVAGDSVIFIWNEKNQLLLGIRRANHPETVMPSLVLSCDSMYIGLLAAAAHAAATNCRFTIFYNPRACLSEFVVPLAKYVKAVYHTQVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWHSVKSTAGEKQPRVSLWEIEPLSTFPMYPSPFPLRLKRPWPSELPYFHGLKDGNMSISSPLIWLQGGLEDQGTQSLNFQGLGVTPQVQPRFDTPIPGRQPEIYQAMAAAALQEMRSMDPSKSSSQPPLLFQQPSNVPSAPTSVLQKQVLPHPNTLLHNLQENKFPVQSQLLQQQLARYHPYSDQRQQQLKIFPVQQQIPNVISPLSNFASATQPQSLSIQPLVSDGQQQSFPKPVRNHISSSDVSPIQSLLGSFSEDGASQLLNLNGSNSILSPASLLPKQINVEPQFPSAAGQCVLPRVENSETSHSELSALPPFPGREYSMYHGSADPQSNLLFSVNIDSSSLMLQNDMPNLRNVGNENDSLSLPFSASNFGGATGTDIPLSSDMTASSCVDESGFLQSSEIVDQANTPTGTFVKVHMSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPQRSGWQLVFVDRENDILLLGDDPWQEFVNSMWYIMILSPLEVQQMFQGLSPSTSTTGHKLCATGNSCDNYVSLQDFRSPSNCIASMGSLDYQNNLLARNGN* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03050 729 SUPERFAMILY CAD & PB1 domains 581 659 - -
Rops11g03050 729 FunFam Auxin response factor 131 198 - -
Rops11g03050 729 MobiDBLite consensus disorder prediction 287 309 - -
Rops11g03050 729 Pfam Auxin response factor 93 175 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops11g03050 729 Gene3D - 581 674 - -
Rops11g03050 729 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 23 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops11g03050 729 MobiDBLite consensus disorder prediction 288 309 - -
Rops11g03050 729 SUPERFAMILY DNA-binding pseudobarrel domain 19 96 IPR015300 -
Rops11g03050 729 FunFam Auxin response factor 580 674 - -
Rops11g03050 729 Gene3D - 131 198 - -
Rops11g03050 729 Pfam B3 DNA binding domain 24 68 IPR003340 GO:0003677
Rops11g03050 729 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Rops11g03050 729 CDD B3_DNA 23 67 IPR003340 GO:0003677
Rops11g03050 729 Gene3D - 1 68 IPR015300 -
Rops11g03050 729 ProSiteProfiles PB1 domain profile. 585 667 IPR000270 GO:0005515
Rops11g03050 729 Pfam AUX/IAA family 576 665 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03050 Rops-Chr11 53995044 54011829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03050 23 673 B3 DNA Binding Superfamily AT5G37020 47.440 1.02e-155 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops11g03050 AUX_IAA 1.5e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03050 - - gmx:100810798 1071.23