Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03044 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATACCTGTGTCACCAATCAAAAGAAGCCCACGGGGCTGGACCATGAACTTGTGGAGCTCCTATGGCAAAATGGCCAGGTGGTATTGCACAGCCAAACACATAGGAAACCAGTTGTGAATTCAGCCTCTACAAGACAGGTTCAAGAAAATCTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAATTCAAGTAACTTGATCCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCACTGGAACAAGAGTTATGTTCAAGCCTTTTATCTGAACATCCAACCTATGAAGTTGAGTCTTATAAGCAAATCAAGCAATTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGTGCTCCCCATGTGACTGTAAGTTCACAACCACCTAATGTGAAACCCTCCTTTGTTCAGGAATTCTCAGGAATTCCTATGCCTCCAGCTCCAAGATTCCATGTTTCTGATTCATCTCAGAAAAAAAATGACTTGGGTGGATCAAGAAAGGTCCTAAACTTTTCTCACTTTTCAGCACCCCCTAATGTTTCTTCAGCATCTGCTAATGCACATTTAAGAGACAAAATTTCTGGTAAAAGTGATATTAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGTTACTGTGGCAGTAATCAAATCCCACAAGACCCAGATGTAAGCAGGGCATCAAGCAATTGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTAAGAGATGATGTCCAAAGAACAATTCCACAAGACCCAGATGTAAGCAGGGCATCAAGCAATTGTGTTTGGACTACTACTTTATCTGCTGAGCCTGAAGCTGTAAGAGATGATGTCCAAAGAACAATACCTCAGAGTGGGAAAGGGAAATCAGAGATGCTTGAACCAACTATGACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACTTGTTCCCTATCTACAAGGAACCAGGGCCAAAAAAGGAAAGGGATAGATGTGGAAGAATCAGAGGAACAAAGTGAGGATACAGAACTCAAATCAGCTGTAGGAAACAAGGCATCTCAGAGGGCAGGGTCGGCTCGTAGGAACCGTGCTGCTGAAGTGCATAACTTGTCAGAAAGGAGAAGAAGAGACAGGATCAATGAGAAGATGAGGGCTTTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTGAAATCACTTCAGTTACAACTTCAGTTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGAATGGGAATGACTCCACCTTCTTTTCCTCCTATTCACAACCCAATGCAATTACCAAGAGTGCCACTTGATCAGTCCATATCTGCATCTCAGACACCAAACCAGACATTAATGTGCCAAAATCCTATGTTAGGTGCCTTTAATTACCAAAATCAAATGCAAAATCCAGCTCTTTCGGAGCAATATGCACGTTACATGGGTTATCATCTTATGCAAAATTCCTCTCAGCCAATGAATATGTACAGATATGGTGCCCAGGCAGAACAACATGGTCAAACAATGATTCCACCCAGCAATAGCATTGGCCCCATGAGTGGAGCAGCTAATATTGATGATCCTGTGAGTGGAAAAATGGGTTAA 1728 0.4236 MNNSVPDWNFGSDTCVTNQKKPTGLDHELVELLWQNGQVVLHSQTHRKPVVNSASTRQVQENLQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQELCSSLLSEHPTYEVESYKQIKQFEEGKFSKLDASSAPHVTVSSQPPNVKPSFVQEFSGIPMPPAPRFHVSDSSQKKNDLGGSRKVLNFSHFSAPPNVSSASANAHLRDKISGKSDIRECSVMTVGSSYCGSNQIPQDPDVSRASSNCVWTTTLSAEPEAVRDDVQRTIPQDPDVSRASSNCVWTTTLSAEPEAVRDDVQRTIPQSGKGKSEMLEPTMTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSAVGNKASQRAGSARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQLMWMGSGMAPMMFPGIQHYMSQMGMGMTPPSFPPIHNPMQLPRVPLDQSISASQTPNQTLMCQNPMLGAFNYQNQMQNPALSEQYARYMGYHLMQNSSQPMNMYRYGAQAEQHGQTMIPPSNSIGPMSGAANIDDPVSGKMG* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03044 575 PANTHER TRANSCRIPTION FACTOR PIF3 18 548 IPR044273 GO:0003700|GO:0006355
Rops11g03044 575 MobiDBLite consensus disorder prediction 292 382 - -
Rops11g03044 575 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 382 457 IPR036638 GO:0046983
Rops11g03044 575 CDD bHLH_AtPIF_like 379 442 IPR047265 -
Rops11g03044 575 Pfam Helix-loop-helix DNA-binding domain 383 429 IPR011598 GO:0046983
Rops11g03044 575 FunFam Basic helix-loop-helix transcription factor 374 437 - -
Rops11g03044 575 MobiDBLite consensus disorder prediction 555 575 - -
Rops11g03044 575 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 428 IPR011598 GO:0046983
Rops11g03044 575 MobiDBLite consensus disorder prediction 303 341 - -
Rops11g03044 575 Gene3D - 374 435 IPR036638 GO:0046983
Rops11g03044 575 SMART finulus 385 434 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03044 Rops-Chr11 53903008 53908643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03044 1 98 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 40.187 1.60e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops11g03044 HLH 5.1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03044 K16189 - gmx:100784531 835.484