Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03032 ATGCACCATTTTCTGATTGCTAGATTAACTTCTAAGACCCACCAATTTGGTGTTCTATACCACAATGCTCTTTCGCTTTTCTTCACTTCTCGTGCTTTATCTGTATCCAACACAAATCACCACCAAGGTGGCTCCTTTATGGTCTCAAGCCTCATCAATTCATGTGGGTTGTCCCCTGAAATGACCCTTAACCTCTCCAAGAGGTTGCAACGGAGATACCCAGACGGGTCAAATGTTGTGGTTGAACTCCTCATGAACTATGGGTTCTCTGAGACCCAGTTATATAGCCTTGTCAAGAAATTCCCTTTAGTGCTTTTAGCAAAACCTGAGAAGACCCTTTTGCCAAAACTCAAGTTCTTCCATTCTATTGGGGTTTCAACCACTGAACTCCCCATAATCCTCATTGGAAACACTTCATTCTTGACAAAGAGCTTGGAGAAAACCATTATCCCTCGTTATGAGGTCATCAGGAGCCTAGTTCGTAGTGATAAGGAGGTGGTTTCAACTTTGAAGCGTGGGCTATGGCGATTTAACTCTGGTGAGGCGATAAATGATTCAGTTCCTAACGTTGAGGCTTTAAGACAGCTTGGCCTGCCTCAGGGTTCCATTTCTCTCTTGGTAACCAATTATCCTAGTGTAGCATTTATGAAGCATTCTAAATTTGTTGAAGCTGTAAACACAGTCAAGGAAATGGGGTTTGATCCTTTGAAAACAAATTTTGTTTTGGCACTTCAAGTAGTTGCAAAGATGAATAAAACAATGTGGGAATCAAGATTAAAGATTTTTGAGAGGTGGGGCTGGTCCAGAGATATATGTCTATCAGCTTTCAGAAAGCATCCCCAGTGTATGATGTTGTCAGAAAAGAAGATTATGAAAATACTGAACTTCTTGGTGAAGGATATGAATTTTACCCCAGAAGACATTGCTAGAAGCCCTGGGATTCTGGACCGCAACTTGGAGAAGACATTGATCCCTAGATGTGCAGTTGTTAAAATTTTAAAGTCAAGGGGTTTGGTAAAGAGTGGTTTGCGCATAAGTACCTATATTTCGATTAGTGAGGAAAGGTTTTTGCAAAGGTATGTGACTCAATTTCAGAAAAAAGTGCCATTATTATTGGATGCATATAAAGGTCAGATGTCAGATTGA 1146 0.4058 MHHFLIARLTSKTHQFGVLYHNALSLFFTSRALSVSNTNHHQGGSFMVSSLINSCGLSPEMTLNLSKRLQRRYPDGSNVVVELLMNYGFSETQLYSLVKKFPLVLLAKPEKTLLPKLKFFHSIGVSTTELPIILIGNTSFLTKSLEKTIIPRYEVIRSLVRSDKEVVSTLKRGLWRFNSGEAINDSVPNVEALRQLGLPQGSISLLVTNYPSVAFMKHSKFVEAVNTVKEMGFDPLKTNFVLALQVVAKMNKTMWESRLKIFERWGWSRDICLSAFRKHPQCMMLSEKKIMKILNFLVKDMNFTPEDIARSPGILDRNLEKTLIPRCAVVKILKSRGLVKSGLRISTYISISEERFLQRYVTQFQKKVPLLLDAYKGQMSD* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03032 381 Pfam mTERF 250 357 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 Pfam mTERF 82 234 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 Gene3D Transcription termination factor 3, mitochondrial 58 184 IPR038538 -
Rops11g03032 381 Gene3D Transcription termination factor 3, mitochondrial 185 368 IPR038538 -
Rops11g03032 381 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 SMART mt_12 204 234 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 SMART mt_12 273 304 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 SMART mt_12 131 162 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 SMART mt_12 305 339 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 PANTHER CGI-12 PROTEIN-RELATED 46 363 IPR003690 GO:0003690|GO:0006355
Rops11g03032 381 FunFam Mitochondrial transcription termination factor-like 145 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03032 Rops-Chr11 53642371 53643516 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g03032 mTERF 1.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03032 K15032 - gmx:106799612 489.574