Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03031 ATGCACCATTTTCTGATTGCTAGATTAACTTCTAGGACCCCTCAATTCGGTGTTCTCTATCACAATGCTTTTCCTCTTTTCTTCACTTCTCGTTCTTTATCTGTGACAAATCATCACCAAGTTGGCTCCTTTACGGTTTCCAACCTCATCAATTCATATGGGTTGGCCCCAGAAATGGCCCTTAAACTCTCCAAAAGGTTGCAAAGGAGATACCCAGATGGGTCAAATGTTGTGGTTGAGATTCTCATGAACTATGGGTTCTCTGAGACCCAGTTATCTAGCCTTGTCAAGAAAGTACCTTCTGTGCTTTTAACTAAACCTGAGAAGACCCTTTTGCCAAAACTCAAGTTCTTCAATTCTATCGGGGTTTCAACCACTGAACTCCCTAGAATCCTCATTGGAAACACTTCATTCTTGACAACAAGCTTGGAGAAATCCATTATCCCTCGTTATGAGGTCATAAGGAGCCTAGTTCGTAGTGATAAGGAGGTAGTTTCAACTTTGAAACATGGGCTATGGCACTTTCACTCTGGTGCTATGATAAAAGATTCAGTTCCTAACATTGAGGCTTTGAGACAGCTTGGTTTGCCTCAAGGTTCCATTTCCCTCTTGGTAACCAATTTTCCTAGTGTAGCATTTATGAAGCATTCTAAATTTGTTGAAGCTGTAAACACAGTCAAGGAAATGGGGTTTGATCCTTTAAAAACAAATTTTGTTTTGGCACTTCAAGTAGTTGCAAAGATGAATAAAGATATGTGGGAATCAAGATTAAAGATTTTTGAGAGGTGGGGCTGGTCCAGAGATATCTGTCTATTAGCTTTCAAAAAGTATCCTCAGTATATGATGATGTCTGAAAAGAAGATTTTGAAAATATTGAGCTTCTTGGTGAAGGAAGGTTTACCCCCAGAAGAGATTGCTAGAAGCCCTGGGATTCTGAACCGAAACTTAGAGAAGACATTTATCCCTAGATGTGCAGTTGTCAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATATGCGGATAAGTAGCTTCATGTCTATGAATGAGAGGAGGTTTTTGGAGAGATTTGTGACCCGATTTCAGAAAGATGTGCCAGTACTATTGGATGCTTATAAAGTTCAGAAGTCTGATTGA 1137 0.3967 MHHFLIARLTSRTPQFGVLYHNAFPLFFTSRSLSVTNHHQVGSFTVSNLINSYGLAPEMALKLSKRLQRRYPDGSNVVVEILMNYGFSETQLSSLVKKVPSVLLTKPEKTLLPKLKFFNSIGVSTTELPRILIGNTSFLTTSLEKSIIPRYEVIRSLVRSDKEVVSTLKHGLWHFHSGAMIKDSVPNIEALRQLGLPQGSISLLVTNFPSVAFMKHSKFVEAVNTVKEMGFDPLKTNFVLALQVVAKMNKDMWESRLKIFERWGWSRDICLLAFKKYPQYMMMSEKKILKILSFLVKEGLPPEEIARSPGILNRNLEKTFIPRCAVVKILKSRGLIKSDMRISSFMSMNERRFLERFVTRFQKDVPVLLDAYKVQKSD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03031 378 PANTHER CGI-12 PROTEIN-RELATED 43 360 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 SMART mt_12 129 160 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 SMART mt_12 302 336 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 SMART mt_12 93 124 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 SMART mt_12 271 301 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 SMART mt_12 202 232 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 FunFam Mitochondrial transcription termination factor-like 143 365 - -
Rops11g03031 378 Gene3D Transcription termination factor 3, mitochondrial 175 364 IPR038538 -
Rops11g03031 378 Pfam mTERF 248 354 IPR003690 GO:0003690|GO:0006355
Rops11g03031 378 Pfam mTERF 80 288 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03031 Rops-Chr11 53620067 53621531 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g03031 mTERF 7.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03031 K15032 - gmx:106799612 473.396