Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03030 ATGGTACCCAATTTTTTCATTGCAAGATTAACTGTATCATCATTCACTTACTTGAAGAGTACCCAAGTTCAATTGGGTTCTCTGCTGCAACACAATGCTTTCTTTTTTTGCTTCAATTCATTCACTTCAAGCACCTCTTCTGATTCTGAATCAAATGAAAACCACCACAAAGGTGACACCTTTACGGTGTCTTACCTCATAAACTCATGTGGGTTGTCTCCAAAATTGGCCAAGGAACTCTCCAAAGGGTTCAATTTGGAAAACCCAAATGGCCCAAATGCTGTTCTTGATCTTCTCAAGAACTATGGTTTCTCCAAAACCCATGTTGCAAAACTTGTGGAGAAACATCCCATGTTGCTCTTTGCAAATGTAAAGAATACCCTTTTGCCTAAACTGAAGTTCCTCCATTCTATTGGGGTTTCCACCAATGACATGCCAAAGATCTTGATTGGTAACCATCTTATCTTGTTGAGGAGCTTGGAGAAATGCATCATTCCACGTTTTGAGATCCTAAGGGGTGTAGTTCGTAATGATGAGGAAGCTGTTAGGGCTTTGAGGAATGCACCACGTGGTTTTACATATTGTGACTTGATGAATGTTTTGGTTCCAAACATTGAGGTTTTGAGACAAGCTGGTGTGCCTCAAACTTCCATTTCTCTCTTTTTGGTCCATTTTCCATATGCAGCATATGTGAAGCATTCCAAATTTGTGGAAGCTGTTAAAACAGTCGAGGAAATTGGGTTTAATCCTTTGAGAACAACTTTTGTCATGGCTGTTCAAGTGCTTATAACTATGAGTAAACCGGTATGGGAATCGAGGTTTGAGGTCTATGAGAGGTGGGGCTGGAACCGTGAAATGGTGCTTCTAGCATTTAGAAAGTTTCCCAATTTTATGAAGTTGTCAGAGGAGACAGCTACGAAGAAAATGAGTTTCCTAGTGGATGATATGGATTGGCCATCAGAAGATATTGCTAAATTTCCTACTGTTCTAGGCTTTGGCTTGGAGAAGAGGATTATCCCTAGAGTCTCTGTAATTAAGGTCTTGAAATCAAAAGGTCTGCTTAAGCATAATTTACACTTCAGTTCCTTTATGTGCATGGTTGAGGAAAAGTTTTTGAACAAATTTGTCATCAATTTTCAGAAAGATTTGCCTTTCTTGTTAGATGTCTACAAAGGTTTGGTTGATGTTCAGGGTGTATTATAG 1203 0.3924 MVPNFFIARLTVSSFTYLKSTQVQLGSLLQHNAFFFCFNSFTSSTSSDSESNENHHKGDTFTVSYLINSCGLSPKLAKELSKGFNLENPNGPNAVLDLLKNYGFSKTHVAKLVEKHPMLLFANVKNTLLPKLKFLHSIGVSTNDMPKILIGNHLILLRSLEKCIIPRFEILRGVVRNDEEAVRALRNAPRGFTYCDLMNVLVPNIEVLRQAGVPQTSISLFLVHFPYAAYVKHSKFVEAVKTVEEIGFNPLRTTFVMAVQVLITMSKPVWESRFEVYERWGWNREMVLLAFRKFPNFMKLSEETATKKMSFLVDDMDWPSEDIAKFPTVLGFGLEKRIIPRVSVIKVLKSKGLLKHNLHFSSFMCMVEEKFLNKFVINFQKDLPFLLDVYKGLVDVQGVL* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03030 400 PANTHER CGI-12 PROTEIN-RELATED 59 377 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 FunFam Mitochondrial transcription termination factor-like 160 383 - -
Rops11g03030 400 Gene3D Transcription termination factor 3, mitochondrial 152 383 IPR038538 -
Rops11g03030 400 Pfam mTERF 262 371 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 Pfam mTERF 96 305 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 146 177 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 320 354 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 110 141 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 288 319 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 253 283 IPR003690 GO:0003690|GO:0006355
Rops11g03030 400 SMART mt_12 182 214 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03030 Rops-Chr11 53611988 53613190 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops11g03030 mTERF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03030 K15032 - gmx:100786641 526.554