Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03025 ATGGGAGAACTTGAGGTGAAGGGTGACCAGCAAAGGCTCATATTTCCTGGGAAGCAATTGAAGGATGGTCGCACTCTTGCAGATTACAACATTCAAAAGCAGTCCACCCTTCACCTTGTGCTTCGCCGATCTTCAGGTGCGAGTGAGGTCGTCAATGGCGAAAGGCTCGCCGGTCTTTTGGTCGCTATGGTGCTTTTCCGGCAAGAATGGGTTCTCTCCTCCAGAGCCGTAATAGCCATCGTTGTGTAG 249 0.5141 MGELEVKGDQQRLIFPGKQLKDGRTLADYNIQKQSTLHLVLRRSSGASEVVNGERLAGLLVAMVLFRQEWVLSSRAVIAIVV* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03025 82 PRINTS Ubiquitin signature 23 44 IPR019956 -
Rops11g03025 82 PRINTS Ubiquitin signature 2 22 IPR019956 -
Rops11g03025 82 SUPERFAMILY Ubiquitin-like 5 47 IPR029071 -
Rops11g03025 82 ProSiteProfiles Ubiquitin domain profile. 1 46 IPR000626 GO:0005515
Rops11g03025 82 Pfam Ubiquitin family 5 43 IPR000626 GO:0005515
Rops11g03025 82 Gene3D - 2 48 - -
Rops11g03025 82 PANTHER UBIQUITIN 8 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03025 Rops-Chr11 53460585 53461023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03025 6 47 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 78.571 1.57e-17 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03025 K02977 - csem:103394857 72.0182