Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03023 ATGAGTGCACCAAAAGTGAATGTGATCCTTAGTCCTGTAGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTCCTGCTTGCAAATTTGATCATCCTATGGCTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACGTGCCTGTTGTACCCTATCTTGTGGGTTCATCAATTGGTACCCTTGCTCCATCATCAGAGTTGCAGCCTGAACATACCACAGGATCCAACAAAGAGTCTGTTCCATCCAGAATATCTTCATTAATGAGCATGTTGACTGGATCAGTTGGCTTGACTTTGTCGACTGGTGAACCTGTTTCTCAATCAAACGCTCAACCATCTGCTCAAAGTTCTGTTCTTTTAACAACTGCCAGTACCACCACTAGTAGCAATGTCTCTCACACCTCAAGCTATGCAATGTGA 459 0.4619 MSAPKVNVILSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMASLSYSPSASSLADVPVVPYLVGSSIGTLAPSSELQPEHTTGSNKESVPSRISSLMSMLTGSVGLTLSTGEPVSQSNAQPSAQSSVLLTTASTTTSSNVSHTSSYAM* 153
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03023 152 MobiDBLite consensus disorder prediction 74 97 - -
Rops11g03023 152 SMART c3hfinal6 18 45 IPR000571 GO:0046872
Rops11g03023 152 ProSiteProfiles Zinc finger C3H1-type profile. 18 46 IPR000571 GO:0046872
Rops11g03023 152 SUPERFAMILY CCCH zinc finger 22 48 IPR036855 GO:0046872
Rops11g03023 152 Gene3D - 18 90 - -
Rops11g03023 152 PANTHER PROTEIN PHOSPHATASE RELATED 3 79 - -
Rops11g03023 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 20 45 IPR000571 GO:0046872
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops11g03023 Rops-Chr11 53428259 53428717 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03023 8 79 C2H2 Transcription Factor Family AT5G18550 33.333 5.29e-07 46.2
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g03023 zf-CCCH 7.9e-09 CL0537
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03023 - - gmx:100782445 190.274