Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops11g03023 | ATGAGTGCACCAAAAGTGAATGTGATCCTTAGTCCTGTAGGTCTTCCTTTGCGCCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGTAAGTTCGGTCCTGCTTGCAAATTTGATCATCCTATGGCTTCACTGAGTTATAGTCCATCTGCTTCTTCCCTGGCTGACGTGCCTGTTGTACCCTATCTTGTGGGTTCATCAATTGGTACCCTTGCTCCATCATCAGAGTTGCAGCCTGAACATACCACAGGATCCAACAAAGAGTCTGTTCCATCCAGAATATCTTCATTAATGAGCATGTTGACTGGATCAGTTGGCTTGACTTTGTCGACTGGTGAACCTGTTTCTCAATCAAACGCTCAACCATCTGCTCAAAGTTCTGTTCTTTTAACAACTGCCAGTACCACCACTAGTAGCAATGTCTCTCACACCTCAAGCTATGCAATGTGA | 459 | 0.4619 | MSAPKVNVILSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPMASLSYSPSASSLADVPVVPYLVGSSIGTLAPSSELQPEHTTGSNKESVPSRISSLMSMLTGSVGLTLSTGEPVSQSNAQPSAQSSVLLTTASTTTSSNVSHTSSYAM* | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops11g03023 | 152 | MobiDBLite | consensus disorder prediction | 74 | 97 | - | - | |
Rops11g03023 | 152 | SMART | c3hfinal6 | 18 | 45 | IPR000571 | GO:0046872 | |
Rops11g03023 | 152 | ProSiteProfiles | Zinc finger C3H1-type profile. | 18 | 46 | IPR000571 | GO:0046872 | |
Rops11g03023 | 152 | SUPERFAMILY | CCCH zinc finger | 22 | 48 | IPR036855 | GO:0046872 | |
Rops11g03023 | 152 | Gene3D | - | 18 | 90 | - | - | |
Rops11g03023 | 152 | PANTHER | PROTEIN PHOSPHATASE RELATED | 3 | 79 | - | - | |
Rops11g03023 | 152 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 20 | 45 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops11g03023 | Rops-Chr11 | 53428259 | 53428717 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops11g03023 | 8 | 79 | C2H2 Transcription Factor Family | AT5G18550 | 33.333 | 5.29e-07 | 46.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Rops11g03023 | zf-CCCH | 7.9e-09 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops11g03023 | - | - | gmx:100782445 | 190.274 |