Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03022 ATGGATGTCGCTAAGTTACATAGCTCTGATGATAACGAAAAGGATGAAGAAATTGTGCTTCCTGGGTTTAGATTCCATCCCACTGATGAAGAGCTTGTTGGGTTTTATCTGCAGAGAAAGGTGGAGAAGAAGCCTCTTCGAATTGAACTCATCAAACAAGTTGATATCTACAAATATGATCCATGGGATCTTCCAAAAGTGAATTCTTTGGGGGACAAAGAATCGTATTTTTTCTGTATAAGAGGGAGAAAGTACAGAAACAGCATAAGGCCTAACAGGGTAACAAGGTCTGGATTCTGGAAAGCCACAGGGATTGACAAGTCTATATATTGTGGAAAAGAACCTCATGAATGCATTGGCCTCAAGAAATCATTAGTCTATTACAGAGGAAGTGCAGGGAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGGTAAAATCAACAACAACAATAATCCTCATGCTAATGCTAGCAATGACGTTCAAGAAGCTGAGGTGTGGACACTCTGCAGGATATTCAAACGCATCCCATCATACAAAAAGTACACTCCAAATTTGAAAGACTCAGCGGTACTCACCAAACCAAACCCTGCAGATTATTCTACCACATGCAGCTTAGATTCTAATAACAACTGCAAGCCATACTTGATTTGTAGAGACCCCTTAGTCATGCAACAAATTGAAAGCAAACCGGTTATTGGAGAGTTTGATGAAAAGAAACACATGTTTCTAGGCCAGTTTGGATCTGTACCTCATCAGGTTCCATCAACCATGTCTTACCCTAGTTCTTGGAATCAGAATTTTGAGGATGCTTTTGCAAATGAGAACTGGGATGACCTAAGTTCTGTGGTTCAGTTTGCCATTAATGATCCATACATGTTTTATGATTGTACAGAAACATCTAGACCACCCTACTTTCCTTAG 942 0.4023 MDVAKLHSSDDNEKDEEIVLPGFRFHPTDEELVGFYLQRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSLGDKESYFFCIRGRKYRNSIRPNRVTRSGFWKATGIDKSIYCGKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGKINNNNNPHANASNDVQEAEVWTLCRIFKRIPSYKKYTPNLKDSAVLTKPNPADYSTTCSLDSNNNCKPYLICRDPLVMQQIESKPVIGEFDEKKHMFLGQFGSVPHQVPSTMSYPSSWNQNFEDAFANENWDDLSSVVQFAINDPYMFYDCTETSRPPYFP* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03022 313 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 17 243 - -
Rops11g03022 313 ProSiteProfiles NAC domain profile. 19 181 IPR003441 GO:0003677|GO:0006355
Rops11g03022 313 FunFam NAC domain-containing protein 35 28 184 - -
Rops11g03022 313 Pfam No apical meristem (NAM) protein 21 147 IPR003441 GO:0003677|GO:0006355
Rops11g03022 313 Gene3D NAC domain 28 184 IPR036093 GO:0003677|GO:0006355
Rops11g03022 313 SUPERFAMILY NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03022 Rops-Chr11 53344261 53347641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03022 9 181 NAC Transcription Factor Family AT5G39820 60.106 5.61e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops11g03022 NAM 1.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03022 - - gmx:100819795 507.294