Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g03006 ATGTCAGGCAACAGTTCTCTGAATGTGGAATTGTCAAAGAAGACTTCATTTTTGGGTTTGAGGCTGTGGGTTTTGATTGGGATAGGTGTTGGTGCATTTATAGTTCTGATTCTTTGCATATTATCGATATGGGTGATGTTTCAGAGAAAGAATAGGAGATCTGTGGACAAGTTCTCTTTATCCCAAATACCACATGTCTCCAAGGATATCAAAGTTGACAAGGTTGGGGTGCAGGCTTCTCATGATCAAGTAGAGAGTGTATCTATTCCTGTTCATGACAAAGCAAGTGATAAGAATTCAGATAAGTTGTCAGTTCATTTGAGCAAGAGAAAATCTGGTGATCCTGATAATATCAGTCAGTGTAGCTCAATTTATCATCTTGAGAGAGGGTTTAGTTCAATGTCAGGAGAAGAAGGAAGCTCCGGAACCGTTAAGAAGCAGTCTACCTTGTCATTTGGAGGGATGGTAACTGCCTCTCCTCTAATTGGCTTGCCAGAAATTTCTCATCTTGGGTGGGGCCACTGGTTCACACTTAGAGATCTGGAACTTGCAACTAATCGTTTCTCTGTGGAGAATGTGATTGGTGAAGGTGGATATGGAGTTGTTTACAGGGGCAGACTGATCAATGGATCTGAGGTGGCAGTGAAGAGACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTGGAAGCTATAGGCCATGTTAGACATAAGAATCTTGTGCGTTTACTTGGATATTGCATAGAAGGAGTTCACAGGTTGCTGGTGTATGAATATGTGAACAATGGTAACTTGGAACAATGGTTACATGGGGCTATGAGCCAACACGGGACACTAACCTGGGAAGCTCGCATGAAAGTTCTACTTGGCACAGCCAAAGCGCTTGCGTACTTACATGAAGCGATAGAACCAAAAGTTGTTCACCGGGATATTAAGTCGAGCAACATATTAATTGATAATGAGTTCAATGCAAAAGTTTCTGATTTTGGTTTGGCCAAACTTCTGGATTCAGGGGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTGGCACCAGAATATGCTAATACTGGTTTGTTAAATGAGAAGAGTGACATTTACAGCTTTGGTGTTCTCCTGTTGGAAGCGGTTACCGGAAGGGACCCTGTAGACTATACACGTCCTGCCAATGAGGTGAATCTTGTTGAGTGGCTCAAGATGATGGTGGGGACAAGGAGGGCTGAGGAAGTTGTGGACTCGAGCCTTGAAGTGAAACCATCAACACGTGCTTTAAAGCGTGCCCTTCTGGTTGCACTTAGATGTGTTGATCCTGATGCAGAGAAGAGACCCAAAATGAGTCAGGTTGTGAGGATGCTTGAAGCTGATGAATATCCATTCCGAGAGGATCGAAGGAATAGAAAGAGCCGCACTGCTAGCATGGAAATTGAATCCCTGAAGGATATTTCTGGTCAATCTGAAGCTGAAAAGGTGAAGGGTTCTGAAGAGACAACAACTCAAGGGTCTTAG 1527 0.4309 MSGNSSLNVELSKKTSFLGLRLWVLIGIGVGAFIVLILCILSIWVMFQRKNRRSVDKFSLSQIPHVSKDIKVDKVGVQASHDQVESVSIPVHDKASDKNSDKLSVHLSKRKSGDPDNISQCSSIYHLERGFSSMSGEEGSSGTVKKQSTLSFGGMVTASPLIGLPEISHLGWGHWFTLRDLELATNRFSVENVIGEGGYGVVYRGRLINGSEVAVKRLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGAMSQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDNEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYTRPANEVNLVEWLKMMVGTRRAEEVVDSSLEVKPSTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTASMEIESLKDISGQSEAEKVKGSEETTTQGS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g03006 508 CDD STKc_IRAK 194 460 - -
Rops11g03006 508 ProSitePatterns Protein kinases ATP-binding region signature. 194 216 IPR017441 GO:0005524
Rops11g03006 508 Coils Coil 208 228 - -
Rops11g03006 508 SMART serkin_6 188 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03006 508 Gene3D Transferase(Phosphotransferase) domain 1 264 477 - -
Rops11g03006 508 MobiDBLite consensus disorder prediction 466 508 - -
Rops11g03006 508 SUPERFAMILY Protein kinase-like (PK-like) 172 461 IPR011009 -
Rops11g03006 508 FunFam Putative receptor-like serine/threonine-protein kinase 264 474 - -
Rops11g03006 508 PANTHER OS01G0323000 PROTEIN 1 483 - -
Rops11g03006 508 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Rops11g03006 508 MobiDBLite consensus disorder prediction 83 117 - -
Rops11g03006 508 MobiDBLite consensus disorder prediction 466 481 - -
Rops11g03006 508 ProSiteProfiles Protein kinase domain profile. 188 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g03006 508 MobiDBLite consensus disorder prediction 87 113 - -
Rops11g03006 508 FunFam Putative receptor-like protein kinase 170 263 - -
Rops11g03006 508 Gene3D Phosphorylase Kinase; domain 1 170 263 - -
Rops11g03006 508 Pfam Protein kinase domain 189 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g03006 Rops-Chr11 52943853 52948506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g03006 5 462 Trihelix Transcription Factor Family AT1G70460 39.224 1.66e-94 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Rops11g03006 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g03006 - - gmx:100813931 884.404