Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02998 ATGAAAAGTTATGGATTTCATCTGGTTGGTCTGTCCTCTAAACCACTGCAGCAACCTTCCTCTTTCCCTAGTATTGTGAAATGTGATTTGGAGGGTAGAGGGTCACAGACACTTGTCTGTGATATTCATGATATCCTCTTAAGGACCCATTCCTTCTTTCCCTATTTCATGATGGTTGCCTTTGAAGGTGGTAGCATTTTCAGAGCATTCCTCTTGCTTTGTTCATGTCCTATACTTTGGATTTTAAACTATGAAACGAAGCTTAGGGTCATGATTTTCATCACATTTTGTGGGCTTAGAATAAAGGACATGGAAATCACATCAAGGGCAGTGTTACCAAAGTTTTACATGGAGAACCTTAACCTTCAGGCTTATGAAGTTCTGGCTTCTGTTGGGTCTAGAGTTTTCTTCACTGCTGTGCCTAGAGTGATGGTAGAAGGATTTCTCAAGGAATATTTGAATGCTGATGCTGTTATAGCTACAGAGTTGCACACTGTTGGCTATTACTTCACTGGTTTGCTTTCTAAGTCTGGTTTGCTAGTGAAGCATAGTGCCCTCAAGGATTATTTTGGAGATAGAAAGCCTGACATAGGGATTGGCATCCCAAGTGTCCATGACCATCATTTTATCTCTCAGTGCAAGGAAGCTTATGTGGTGAACAATGAAGAAGAGTGTCACTGTCATGGCTCAATTATGCCAAGGGACAAATATCCAAAGCCTGTAATATTTCATGATGGAAGACTAGCCTTCTTACCTACTCCTTCGGCAACTCTCTATATGTTCATTTGGCTTCCAATTGGAATTCTGTTAGCCATTTATAGAATGCTTGTGGGTATTTTATTTCCTTACAAATGGACACTTATATTATTAATATGGAGTGGTGTAGATCTGGAAATTAAAGGCTGTAACCGTCAAAGATCAAAACTACTAAGTAATGGGGTACTCTATGTTTGCAACCACAGGACTCTCTTGGATCCTGTTTTTATGAGCATATGTTTGGCCAAACCTTTGACTACTGTCACATATAGCTTAAGCAAGGTGTCTGAGTTCCTATCCCCTATTAGGACCATGAGACTCACGAGGGATAGACAACATGATAGGGATACCATGCAAAGGCTTCTTAGTGAAGGGGACTTGGTGGTGTGCCCTGAAGGAACAACATGTAGGGAGCCATATCTATTGAGGTTCAGCTCTCTTTTTGCTGAATTGGCTGATGATATTGTGCCTGTGGCTGTGAATGCTCATATGAGTATGTTCTATGGGACCACAGCTAGTGGATTAAAATGCTTGGACCCTATTTTCTTTCTCATGAATCCAAGGCCTAGTTATCACATTGAAATCCTTGAGAAGGTTCCTAAAGAAAACACTTGTGCTGGTGGAAAGTCTGCTTGGGAAGTGGCAAATTATATTCAGAGACAATTGGGTGATGCTTTGGGATTTCAGTGCACCAACCTTACAAGAAGGGATAAATATATGATCCTTGCTGGGAATGAAGGGGTTGTTCAAGAAAAGAAGAGGTGA 1521 0.4089 MKSYGFHLVGLSSKPLQQPSSFPSIVKCDLEGRGSQTLVCDIHDILLRTHSFFPYFMMVAFEGGSIFRAFLLLCSCPILWILNYETKLRVMIFITFCGLRIKDMEITSRAVLPKFYMENLNLQAYEVLASVGSRVFFTAVPRVMVEGFLKEYLNADAVIATELHTVGYYFTGLLSKSGLLVKHSALKDYFGDRKPDIGIGIPSVHDHHFISQCKEAYVVNNEEECHCHGSIMPRDKYPKPVIFHDGRLAFLPTPSATLYMFIWLPIGILLAIYRMLVGILFPYKWTLILLIWSGVDLEIKGCNRQRSKLLSNGVLYVCNHRTLLDPVFMSICLAKPLTTVTYSLSKVSEFLSPIRTMRLTRDRQHDRDTMQRLLSEGDLVVCPEGTTCREPYLLRFSSLFAELADDIVPVAVNAHMSMFYGTTASGLKCLDPIFFLMNPRPSYHIEILEKVPKENTCAGGKSAWEVANYIQRQLGDALGFQCTNLTRRDKYMILAGNEGVVQEKKR* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02998 506 Pfam Acyltransferase 311 407 IPR002123 GO:0016746
Rops11g02998 506 PANTHER ANCIENT UBIQUITOUS PROTEIN 36 504 - -
Rops11g02998 506 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 253 502 - -
Rops11g02998 506 CDD LPLAT 284 474 - -
Rops11g02998 506 SMART plsc_2 314 415 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02998 Rops-Chr11 52777914 52780007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02998 36 502 Acyl Lipid Metabolism Gene Families AT1G06520 62.940 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02998 K13508 - gmx:100803875 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02998 11 52777914 52780007 Rops9g00307 9 3899646 3903030 PCT
Rops9g00416 9 5612656 5614719 Rops11g02998 11 52777914 52780007 PCT