Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02957 ATGGAAACTGAAAAGTCTAATGTTGCAAAGGCTGAAGAACTTAAAATCCTTGCTAATGAAGCATTCAAGGCTCGGAAATATGCCCAAGCTATTGATCTATATACACAAGCAATTGAGCTAAACAGTCAAAATGCAGTTTACTTGGCTAATCGTGCCTTTGCCCATCTTCGGCTCGAGGAATATGGTAGTGCAATACAAGATGCCACAAAGGCTATCGAAATTGATCCTAAATATTCAAAGGGTTATTACCGTCGTGGTGCTGCTCATCTTGGGCTGGGGAAATTCAAGGAAGCGCTGAAAGATTTTCAGCAGGTCAAGAAAATATGCCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAGGCAGTTATGAAACTTAAATTTGAAGAAGCAATTGCTGTTCCAGAATCTGAAAGGCGTTCAATAGCTGAATCCATAGATTTCCATACAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGCGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGCTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATGTTGGTGGAGTGGCCGCGATGCTGATGTCGAGCCACAATATTCAGGAGCAAGAATAGAGGGGGATGTCGTTACTTTGGATTTTGTAAAGCAAATGATGGATGATTTCAAGAATCAGAAGTTCTTGCATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGTTGCAAGCTTTACCTTCTCTTGTTGATATAACTGTTCCTAATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTTCTATGATCTTTTAAATATTTTTGAGCTCAATGGTCTTCCTTCAGAAGACAATCCGTATCTATTTAATGGTGACTTTGTGGATAGAGGATCTTTTTCCTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGGCATATATCTAGCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGGTCAAAGTTGAATGAAACATTTGTTGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCACGTGATAAATGAGAAAATTTTCGTAGTCCATGGAGGCCTTTTTAGTGTTGATGGGGTAAAACTCTCTGACATCCAATCTATTAATCGGTATTGTGAGCCTCCTGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGTGGTGTGGGCCTTTCTTTTGGTGTGGATGTGACAAAAAGGTTCTTGCAGGAAAATAATTTAGACCTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGTTATGAGATTCAACATGATGGTAAACTCATAACTGTATTTTCTGCTCCAAATTACTGTGACCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCTCCTGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCACACCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTTCGGATGTTCTCATGA 1623 0.4134 METEKSNVAKAEELKILANEAFKARKYAQAIDLYTQAIELNSQNAVYLANRAFAHLRLEEYGSAIQDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKICPNDPDATKKLKECEKAVMKLKFEEAIAVPESERRSIAESIDFHTIGKGRNSSVPTEVAIAAATVAVMAVVVMLFRTSKTTIVAAIVVGLLLLLGACWWSGRDADVEPQYSGARIEGDVVTLDFVKQMMDDFKNQKFLHKRYAFQIVLQTREMLQALPSLVDITVPNGKHFTVCGDVHGQFYDLLNIFELNGLPSEDNPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSGIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIQSINRYCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGVDVTKRFLQENNLDLVVRSHEVKDEGYEIQHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 461 481 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Rops11g02957 540 PRINTS Serine/threonine phosphatase family signature 483 499 IPR006186 GO:0016787
Rops11g02957 540 Gene3D - 207 539 IPR029052 -
Rops11g02957 540 FunFam Serine/threonine-protein phosphatase 5 204 539 - -
Rops11g02957 540 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Rops11g02957 540 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Rops11g02957 540 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Rops11g02957 540 PIRSF PPPtase_5 1 540 - -
Rops11g02957 540 CDD MPP_PP5_C 218 533 IPR041753 -
Rops11g02957 540 Gene3D Tetratricopeptide repeat domain 2 158 IPR011990 GO:0005515
Rops11g02957 540 SMART tpr_5 11 44 IPR019734 GO:0005515
Rops11g02957 540 SMART tpr_5 79 112 IPR019734 GO:0005515
Rops11g02957 540 SMART tpr_5 45 78 IPR019734 GO:0005515
Rops11g02957 540 Pfam PPP5 TPR repeat region 212 270 IPR013235 -
Rops11g02957 540 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Rops11g02957 540 SUPERFAMILY Metallo-dependent phosphatases 227 534 IPR029052 -
Rops11g02957 540 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 533 - -
Rops11g02957 540 Pfam Calcineurin-like phosphoesterase 278 472 IPR004843 GO:0016787
Rops11g02957 540 SMART pp2a_7 246 522 IPR006186 GO:0016787
Rops11g02957 540 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Rops11g02957 540 SUPERFAMILY TPR-like 7 137 IPR011990 GO:0005515
Rops11g02957 540 Pfam Tetratricopeptide repeat 17 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02957 Rops-Chr11 51887202 51901220 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02957 224 462 Calmodulin-binding Proteins AT5G63870 31.690 8.66e-38 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02957 K04460 - gmx:100820099 1004.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02957 11 51887202 51901220 Rops11g02957 11 51887202 51901220 ECH