Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02902 ATGTCACCCAGCTTCGTCTTCGATCCTCCCAGCGACGAAGAAGTCGAACGCTCCGAGCACGAAGAAGAAGAAGAAGACGAAGACGAAGAAGAAGAGTCTGAATCAGAAGAAGAAGAAGAAGAAGAGCGCAAAGAAGCACGTGTATCGAAGAAGAAAACACAGTCTCCATGGGACTTCGCTAAATACACGGAATCAGTTGCCGAGGAACATGCTCGTAGGAGCACGACCTCGGTCGACGAGAAAATCTCCAAAGCCCTTCGACAACGTTCCACGCCGCTCGTTGCAGTGCTCGACCCGGATGATGATAGCTCCGAGTCCGAAGCCGATAAACAAGAAGATTATAGACCGGAAGAAGAAGATGAAGAAGAGGGTAATGCTGGTGATAACAAGTCCTTTTTTGCCCCTTCTGATGGAGCCTCTTTCCATGCTGATTCCTTCATGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCTGCTTGTATACCGTTAGCATTGACTGGTCGTGATATATGTGGAAGTGCCATTACCGGGTCAGGAAAGACAGCTGCATTTGCGCTACCCACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGCATGCATGCAATAAGGGTCCTTATTCTTACTCCAACCAGGGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTCACCGATATAAGGTGTTGCCTGATTGTTGGGGGTCTGTCAACAAAGGTGCAAGAGGTTGCCTTGAGATCGATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGTAATACTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATTCTTGATGAGGCGGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCATGAACTTGTTCGCATGTGTTCCAAAAAAAGGCAGACCATGCTGTTTTCGGCAACTATGACTGAGGAAGTTGACGAACTTATTAAACTTTCCCTGTCAAAACCCTTACGTCTTTCTGCTGACCCATCTTCAAAACGACCAGCAACCTTGACTGAGGAGGTGGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCATTGTGCTCCAAAACTTTTACTGCCAAAGTGATCATCTTCAGTGGGACGAAGCAAGCCGCACATAGGTTGAAGATTATGTTTGGATTAGCTGGATTGAAAGCGGCTGAGCTTCATGGAAATCTTACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGGAAGTGGAGTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAACTTTGCATGTCCACGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCCGGAAGAGAAGGATATGCTGTCACTTTTGTTGCTGATAATGACCGTTCGCTTTTAAAAGCCATTGCAAAGAGGGCTGGGTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAATAATTGATCAAATGGAGGATCAAATTGTGGAGATACTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAAGAGATCTTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGTTGCAGAAGCTGCAAAGGCATCTGTGAACAAAGAAGAGAGTTCTGGGAAAGAGGTAATTAGTGCCCAACAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAGCGAGAGCGTGAGAAAAATTTGCCTAGAAAAAAGCGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGGGGAGCAGGATGACAAGCCAGTAGCTAAGGGGACAAATAAGAACGAAAAGGGTGGAATGTCACTTGTTGATCTTGCTTACCGACGAGCAAAAGCAGTGAAGGCCGTCAAGAAGGCACTTGATTCTGGCAAGATCATACAGAAGAGTAAAAAGAAATCTAATAATCCTTCCAGAAAGCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGATAAAAAGCCAAAAAGAAAAGGTCTTGGAGCAGGAAAGAAGTCTAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAAGTAG 2247 0.4562 MSPSFVFDPPSDEEVERSEHEEEEEDEDEEEESESEEEEEEERKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALRQRSTPLVAVLDPDDDSSESEADKQEDYRPEEEDEEEGNAGDNKSFFAPSDGASFHADSFMQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKRMHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLIVGGLSTKVQEVALRSMPDIVVATPGRMIDHLRNTMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCSKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSSKRPATLTEEVVRIRRMREVNQEAVLLALCSKTFTAKVIIFSGTKQAAHRLKIMFGLAGLKAAELHGNLTQAQRLEALEQFRKQEVEFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVADNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQIIDQMEDQIVEILEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLVAEAAKASVNKEESSGKEVISAQQAEDLRMKEKRKREREKNLPRKKRRKLEAAREMLEDGEQDDKPVAKGTNKNEKGGMSLVDLAYRRAKAVKAVKKALDSGKIIQKSKKKSNNPSRKPSRTEEMRELFQTDMKDKKPKRKGLGAGKKSKSSFKSKSRYKRK* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02902 748 MobiDBLite consensus disorder prediction 726 748 - -
Rops11g02902 748 Coils Coil 529 569 - -
Rops11g02902 748 CDD SF2_C_DEAD 361 493 - -
Rops11g02902 748 Pfam Helicase conserved C-terminal domain 380 484 IPR001650 -
Rops11g02902 748 SMART helicmild6 399 484 IPR001650 -
Rops11g02902 748 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 523 IPR001650 -
Rops11g02902 748 MobiDBLite consensus disorder prediction 15 41 - -
Rops11g02902 748 Gene3D - 95 351 IPR027417 -
Rops11g02902 748 Gene3D - 360 538 IPR027417 -
Rops11g02902 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 504 IPR027417 -
Rops11g02902 748 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 295 303 IPR000629 -
Rops11g02902 748 Coils Coil 17 47 - -
Rops11g02902 748 Coils Coil 608 628 - -
Rops11g02902 748 MobiDBLite consensus disorder prediction 593 667 - -
Rops11g02902 748 MobiDBLite consensus disorder prediction 100 125 - -
Rops11g02902 748 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Rops11g02902 748 SMART ultradead3 163 364 IPR014001 -
Rops11g02902 748 MobiDBLite consensus disorder prediction 681 748 - -
Rops11g02902 748 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 59 700 - -
Rops11g02902 748 MobiDBLite consensus disorder prediction 1 134 - -
Rops11g02902 748 MobiDBLite consensus disorder prediction 702 725 - -
Rops11g02902 748 Pfam DEAD/DEAH box helicase 168 338 IPR011545 GO:0003676|GO:0005524
Rops11g02902 748 MobiDBLite consensus disorder prediction 63 86 - -
Rops11g02902 748 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 349 IPR014001 -
Rops11g02902 748 MobiDBLite consensus disorder prediction 630 657 - -
Rops11g02902 748 CDD DEADc_DDX27 155 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02902 Rops-Chr11 50727794 50737930 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02902 132 501 Eukaryotic Initiation Factors Gene Family AT3G13920 32.976 3.00e-50 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02902 K13181 - gmx:100776684 1063.52