Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02854 ATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTCGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCTCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTAGCAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACGTTCAATGCCTTGTTAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAGGTTGAATGTTGTAAAAGAATGGTACCAGATGGAGTTAGTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGTCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCTGAGTTTGCAGCTGCTGTCTTCGGCCCTGATATTGATTTAGTGGGTGGGAACACGCAGAATGAGAGTTTCATGGGTCTAAGTGATCTATTCTGTAAGGATGCTGGACATCTTTTGGAGAAATTTCTCATACGAAAAGACTACTGCTTCTCAAGACTTGATGGGTCCACTCCGAATAATTTACGTCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGATAGGTCCTTTCGTTTTGGACAGAAGCGACATGTCATGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGAGGAGCTAGTTTATTCTCGTCAGAAGTATAAGGATAACGGCCATGTAGATGTGGTCTCGAGTCCTTCAAAGCGGCGTGAACTACAAGATGGTGGAGTGATGTTGTCGCAACAAGCAAGAGGAATATTCTTGCAACAAGGTAATACTTTAGCTATGGGCAGCCTTCTCGAAACCCACATGGGTGTCGAATGTCCTGGGGAAGGCAATTTCGTTAGTGGACCTGAGGCTAGTGGAATACAGTCATATAATAATAACAATAAGTCAGGGGAAGACCTTAAGGGGACTAGCGTTTCAACGGAGGAATCATCCAGTAAGTGTGAAGACTTATCACCGGGCTTGGAGCTGTGTGGGCCGAATCAAGTGATGGTTAGTGGGGTCTTTGAGGGGCCTGTTTATTCAAATAACTTGGATGGGGCTGGAAGCTTATTAAACCGGGTCAGTATAGTTGAAGGATCATCTAGCTTGCAGAAGCTTGGGACGTTGGGCCTTCCGTCCAGTGCTAATTTTCTGGCCCATCCCATTTCAGTCACCAGACATCATGACGCTGTGGTGGGCAGAATATTAGAAGACCCAATCCGACCTGTCTGTCCTTCGTGGGGCTCTGATGAATTCCGAAAATCAAGCTGGGGAGGGTCGTGCAAGCATAATTCCTTTTCTTGTCCTAATCAGTTTCATCGAGAACCACTCGTTAAGGAGGTGAGGGGGCCATCACAAGGTAAGGCTTCATGTGATCCTGGGGTAAATTCCAAAAAACTCAAGAAACAAAGTTCCAAATATAAAAGAGTAAGGAAAAGTCAGCTTCAAAAGAGGCGGCAGAGTGTCCGTATGAAGAAACAAAGGGAGACTGATGCCAGTGGGTGTGACGTTCAGAAGTTAAAGAGCGGTTCTCAAGAAGATGGAAGCCCAAGACCCTTTGAAGAAATTGACCTAAGAGAAAATAGAGTCAAAAGGCCAACTTATATTATCACTCTTTTAGATTCTGATTTTAAGGCCAAACTGGTCGAATTACTCAATGAGTATAGAGATTGTTTTGCATGGGAGTATGAAGAAATGCCTGGTCTGGATAGAGAATTGGTGGAATATAGATTGCCTTTGTATCCTGGTCGAAGACCTGTCAAGCAAACATCTAGTAGATTCACACTTGATGTCGTGGTTAAAATAAAAGAAGAAATTGAAAGACTCTTAAAGGAAAAATTCATCAGAACCACCAGATGGGAACAACAACATCAAAATGCTTTCGACCAGATCAGAAGGTACTTATCGAATCCACCGGTGATGACTCCGCCGATCAAAGGACACACTTTGAAGCTTTATATTTCAGCGTCAGAATCAACTATTGCTTGCATGCTGGCTTAA 2316 0.4365 MELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDVQCLVNKDLPCSCGSPLTQVECCKRMVPDGVSWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDLFCKDAGHLLEKFLIRKDYCFSRLDGSTPNNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVFRLLAAGSLEELVYSRQKYKDNGHVDVVSSPSKRRELQDGGVMLSQQARGIFLQQGNTLAMGSLLETHMGVECPGEGNFVSGPEASGIQSYNNNNKSGEDLKGTSVSTEESSSKCEDLSPGLELCGPNQVMVSGVFEGPVYSNNLDGAGSLLNRVSIVEGSSSLQKLGTLGLPSSANFLAHPISVTRHHDAVVGRILEDPIRPVCPSWGSDEFRKSSWGGSCKHNSFSCPNQFHREPLVKEVRGPSQGKASCDPGVNSKKLKKQSSKYKRVRKSQLQKRRQSVRMKKQRETDASGCDVQKLKSGSQEDGSPRPFEEIDLRENRVKRPTYIITLLDSDFKAKLVELLNEYRDCFAWEYEEMPGLDRELVEYRLPLYPGRRPVKQTSSRFTLDVVVKIKEEIERLLKEKFIRTTRWEQQHQNAFDQIRRYLSNPPVMTPPIKGHTLKLYISASESTIACMLA* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02854 771 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 336 IPR027417 -
Rops11g02854 771 SUPERFAMILY DNA/RNA polymerases 679 770 IPR043502 -
Rops11g02854 771 MobiDBLite consensus disorder prediction 386 426 - -
Rops11g02854 771 MobiDBLite consensus disorder prediction 573 595 - -
Rops11g02854 771 PANTHER SNF2/RAD54 FAMILY MEMBER 1 605 - -
Rops11g02854 771 Gene3D - 215 379 IPR027417 -
Rops11g02854 771 MobiDBLite consensus disorder prediction 394 426 - -
Rops11g02854 771 CDD SF2_C_SNF 221 315 - -
Rops11g02854 771 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 195 349 IPR001650 -
Rops11g02854 771 SMART helicmild6 221 304 IPR001650 -
Rops11g02854 771 Gene3D - 74 99 IPR027417 -
Rops11g02854 771 Gene3D - 2 73 IPR038718 -
Rops11g02854 771 MobiDBLite consensus disorder prediction 552 627 - -
Rops11g02854 771 Pfam Helicase conserved C-terminal domain 222 304 IPR001650 -
Rops11g02854 771 Pfam SNF2-related domain 2 103 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02854 Rops-Chr11 49605302 49624720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02854 222 331 RAD5 or RAD16-like Gene Family AT5G43530 40.909 7.47e-18 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g02854 Helicase_C 1.2e-13 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02854 K20098 - gmx:100781003 634.409