Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02853 ATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTCGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCTCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTGAATGTTGTAAAAGAATGGTACCAGATGGAGTTAGTTGGCCTTACCTTCACAGAGATAACCCTGATGCTATTCTGTAAGGATCTTTGGACATCTTTGGAGAAATTTCTCATACGAAAAGACTACTGCTTCTCAAGACTTGATGGGTCCACTCCGAATAATTTACGTCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGATAGGTCCTTTCGTTTTGGACAGAAGCGACATGTCATGGTGTTAGTCTTCTTGCGGTAG 501 0.4391 MELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRLNVVKEWYQMELVGLTFTEITLMLFCKDLWTSLEKFLIRKDYCFSRLDGSTPNNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFGQKRHVMVLVFLR* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02853 166 Gene3D - 44 165 IPR027417 -
Rops11g02853 166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 43 166 IPR001650 -
Rops11g02853 166 Pfam Helicase conserved C-terminal domain 71 154 IPR001650 -
Rops11g02853 166 PANTHER SNF2/RAD54 FAMILY MEMBER 1 42 - -
Rops11g02853 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 165 IPR027417 -
Rops11g02853 166 CDD SF2_C_SNF 57 165 - -
Rops11g02853 166 SMART helicmild6 71 154 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02853 Rops-Chr11 49594257 49595292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02853 40 165 RAD5 or RAD16-like Gene Family AT5G43530 35.714 4.35e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02853 K20098 - gmx:100781003 176.022