Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02852 ATGGCCTCCAATTTTGCTTCAAGAACCATTATCTTCTCCCATTCCACCAAACACTTCATCTTCCCATTGAAACCCCCTTCTTCTCATGTTCCCTTCTCTCTCCTTCCACGTTTCACAAGAACCACTTGCACCCTACACCACCAACATCAACAACGTTGTCGCGGTGTCATAAGAATCCTCGAAGAAAGAGGGTTAGTTGAGTCCATAACAAGCGATTCTCTCAGAAGCATTTCTTCAAACACCATTGAAGCGCCCCTTAAAGTCTATTGCGGATTTGACCCCACAGCTGAAAGCTTACACTTGGGGAACCTTCTGGGTCTCATTGTTCTCTCATGGTTCCGCTATTGCGGCCACAAAGTCGTCGCCTTGATCGGTGGCGCCACCGCACGCGTCGGCGACCCTTCTGGGAAGAGCCTCGAAAGACCTGAACTTGATATTGAAACCTTGGAGAGGAACACTGTAAAGGGTGGTGCTTATGGTTTGACATTTCCTCTTATATTGAAAAGTGATGGTACAAAGTTTGATGTTGAAGAGATAATTAAGTTGGAGGAAGAGATGATGAAACCTGGGTATGTGCCTAATACTGCTCAGAGGAGGCTCGCTGAAGAGGTTACCGGATTTGTTCAAGGAGAAGAGCTAAGGCATGAAGATAGCACGTGGGTTGTTTGTCTTCAACCAGGGGTCATCCATGCATGCAGGAGGGATGTGCTCCACGTTGTAGCTAAGATCATGGAATTGTTCAATCTCTTTGACTGGGTTGCACCTGGATCCCTCGGAACACGGGAACACTTTCGTGAGTTCTATGATGAACCTCTTAAGCATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTAGCAGTTCTTCATAAATATATGTTGAGAAGGACAAAGGAAGAGACCATTGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTTTGTGCAATGAGTGATTTGCAAAAACGTGTTTACAGGAGAATGTTACAGCTTCCTGACGTTCAATGCCTTGTTAATAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTTACTCAGGTTGAATGTTGTAAAAGAATGGTACCAGATGGAGTTAGTTGGCCTTACCTTCACAGAGATAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGTCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAAGTAAAGATGCTGAGTTTGCAGCTGCTGTCTTCGGCCCTGATATTGATTTAGTGGGTGGGAACACGCAGAATGAGAGTTTCATGGGTCTAAGTGATGTGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTTTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGACTACTGCTTCTCAAGACTTGATGGGTCCACTCCGAATAATTTACGTCAATCTCTGGTTGATGACTTCAACTCAAGTCCAAGCAAACAAGTATTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCAAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTGCACAAGACTTACAGGCCCAGGATAGGTCCTTTCGCTTTTGGACAGCGTTTACATGTCATGGTGTTCCGTCTTCTTGCAGCTGGTTCACTTGA 1773 0.4456 MASNFASRTIIFSHSTKHFIFPLKPPSSHVPFSLLPRFTRTTCTLHHQHQQRCRGVIRILEERGLVESITSDSLRSISSNTIEAPLKVYCGFDPTAESLHLGNLLGLIVLSWFRYCGHKVVALIGGATARVGDPSGKSLERPELDIETLERNTVKGGAYGLTFPLILKSDGTKFDVEEIIKLEEEMMKPGYVPNTAQRRLAEEVTGFVQGEELRHEDSTWVVCLQPGVIHACRRDVLHVVAKIMELFNLFDWVAPGSLGTREHFREFYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLHKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMLQLPDVQCLVNKDLPCSCGSPLTQVECCKRMVPDGVSWPYLHRDNPDGCDSCPFCLVLPCLVKLQQISNHLELIKPNPKDDPDKQSKDAEFAAAVFGPDIDLVGGNTQNESFMGLSDVKHCGKMRALEKLLFSWISHGDKVLLFSYSVRMLDILEKFLIRKDYCFSRLDGSTPNNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPAQDLQAQDRSFRFWTAFTCHGVPSSCSWFT* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02852 590 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 573 IPR027417 -
Rops11g02852 590 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 465 590 IPR001650 -
Rops11g02852 590 Pfam Helicase conserved C-terminal domain 462 572 IPR001650 -
Rops11g02852 590 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 94 104 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops11g02852 590 Gene3D HUPs 37 162 IPR014729 -
Rops11g02852 590 PANTHER SNF2/RAD54 FAMILY MEMBER 242 572 - -
Rops11g02852 590 Pfam tRNA synthetases class I (W and Y) 83 146 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops11g02852 590 Gene3D - 318 580 IPR027417 -
Rops11g02852 590 CDD SF2_C_SNF 456 573 - -
Rops11g02852 590 Gene3D - 239 305 IPR038718 -
Rops11g02852 590 SUPERFAMILY Nucleotidylyl transferase 57 153 - -
Rops11g02852 590 SMART helicmild6 491 574 IPR001650 -
Rops11g02852 590 Pfam SNF2-related domain 242 346 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02852 Rops-Chr11 49567331 49573148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02852 463 573 RAD5 or RAD16-like Gene Family AT5G43530 38.739 5.12e-16 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops11g02852 Helicase_C 1.2e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02852 K20098 - gmx:100781003 664.455