Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02827 ATGGACGGCTCTGTCACTGAACGTTTTGGTTTTGGGAAAATGAGATATAGGTGCAAGCATTATAGGCGAAGATGCAAGATCCGTGCTCCATGTTGCAACGAGATCTACTTCAGTCATCATTGTCATAACGAGGCAACAGGTATGTTGAGGAATCCCTTCGATCACCACAGACTCGTTCGTCAAGATGTTAAACAAGTAGTTTGTTCAATTTGTGACACCGAGCAGTCGGTTGCTCAAGTTTGTACAAACCGTGGTGTCAAAATGGGAGGATATTGCTGCAAGTATCTCAAACCCACAAGTGACTTGTTGCTACTCTCTACACATGTGCTTCCGTGA 336 0.4435 MDGSVTERFGFGKMRYRCKHYRRRCKIRAPCCNEIYFSHHCHNEATGMLRNPFDHHRLVRQDVKQVVCSICDTEQSVAQVCTNRGVKMGGYCCKYLKPTSDLLLLSTHVLP* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02827 111 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 95 - -
Rops11g02827 111 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Rops11g02827 111 SUPERFAMILY CHY zinc finger-like 15 83 IPR037274 GO:0008270
Rops11g02827 111 Pfam CHY zinc finger 18 95 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02827 Rops-Chr11 48934164 48934499 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02827 13 101 C2H2 Transcription Factor Family AT3G18290 30.435 5.06e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02827 K10144 - gmx:100781566 160.999