Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02778 ATGGGTGGTTGTCTAAGTAAAGGTAAAGATTCAGAGCCAGAACACAATGGTTATAGATATGCTGGGTCTGTTGGTGTGCATAACCAGAAGACTCATGAACCCTTGGTCAACCAATCAAGAGCACCTACTAATCAACCTTACCAGTTACCTGAAAAATATGCTGCTTCCACTCACACTGTTCCTCAGATACCAAGAAAGCCTTCTGTTCCTGCTCCAAGTCCAAAACCTGTTAAGCAAGACACGATCCTTGGAAAACAATTTGAGGATGTGAAGCAGTTCTATACACTTGGGAAAGAATTGGGTAGAGGGCAGTTCGGAGTAACACATCTATGCACTGAGAATTCAACTGGGTTGCTTTATGCTTGCAAGTCCATTTCAAAGAGGAAACTTGTTAGTAAATCTGACAAGGAGGATATAAAGAGGGAGATTCAGATCATGCAGCATTTGAGTGGTCAACCTAACATTGTTGAATTCAAAGGTGCTTATGAGGATAAGCAATCAGTTCATGTTGTGATGGAGCTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCCAAGGGGCATTATAGTGAAAGGGCTGCTGCTTCAATATGCAGACAAATTGTTAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTGAAGCCTGAGAATTTCTTGTTATCTAGTAAGGATGAAAATGCACTTCTCAAGGCCACGGATTTTGGTTTGTCAGTTTTCATTGAAGAAGGAAAGGTGTACCGGGATATAGTTGGGAGTGCTTATTATGTTGCTCCAGAAGTTCTCCGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCGGGAGTTATATTGTATATCCTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATATTTGATGCCATATTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCTCAAATATCAGATAGTGCCAAGGATCTTGTTCGTAAGATGCTTATACAGGATCCAAAGAAACGCATCACTTCTGCACAGGTTCTAGATCACCCATGGATTAAAGATGGAAATGCTTCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAAGTCAAGAAACTTGCCTTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGTTTGAAGGCAATGTTTACAAATATGGACACTGACAAGAGTGGTAGCATTACCTATGAAGAACTAAAGGCAGGATTGCATAGACTTGGCTCAAAGCTTACAGAGGCTGAAGTGAAGCAATTGATGGAAGCTGCTGATGTAGATGGAAATGGCACAATTGACTATATAGAATTCATCACTGCTACAATGCATAGACACAAGTTAGAAAGAGATGACAATCTTTCCAAGGCCTTCCAATATTTTGATAAAGACAACAGTGGGTTTATTACAAGAGATGAACTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATTATATCTGAAGTTGATACAATTATCTCTGAAGTGGATACAGATAATGATGGTAGAATCAACTATGAAGAATTCTGTGCAATGATGAGGAGTGGAAACCAACAAGGCAAGCTATTCTAA 1644 0.4033 MGGCLSKGKDSEPEHNGYRYAGSVGVHNQKTHEPLVNQSRAPTNQPYQLPEKYAASTHTVPQIPRKPSVPAPSPKPVKQDTILGKQFEDVKQFYTLGKELGRGQFGVTHLCTENSTGLLYACKSISKRKLVSKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDKQSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPQISDSAKDLVRKMLIQDPKKRITSAQVLDHPWIKDGNASDKPIDSAVLSRMKQFRAMNKVKKLALKVIAENMSAEEIQGLKAMFTNMDTDKSGSITYEELKAGLHRLGSKLTEAEVKQLMEAADVDGNGTIDYIEFITATMHRHKLERDDNLSKAFQYFDKDNSGFITRDELETAMKEYGMGDEATIKEIISEVDTIISEVDTDNDGRINYEEFCAMMRSGNQQGKLF* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02778 547 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Rops11g02778 547 Gene3D - 360 543 - -
Rops11g02778 547 SMART serkin_6 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02778 547 FunFam Calcium-dependent protein kinase 1 359 541 - -
Rops11g02778 547 Pfam Protein kinase domain 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02778 547 CDD STKc_CAMK 93 351 - -
Rops11g02778 547 Pfam EF-hand domain pair 471 538 IPR002048 GO:0005509
Rops11g02778 547 Pfam EF-hand domain pair 399 459 IPR002048 GO:0005509
Rops11g02778 547 Gene3D Transferase(Phosphotransferase) domain 1 180 359 - -
Rops11g02778 547 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Rops11g02778 547 ProSitePatterns Protein kinases ATP-binding region signature. 100 123 IPR017441 GO:0005524
Rops11g02778 547 MobiDBLite consensus disorder prediction 30 52 - -
Rops11g02778 547 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Rops11g02778 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Rops11g02778 547 ProSiteProfiles Protein kinase domain profile. 94 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops11g02778 547 SMART efh_1 470 498 IPR002048 GO:0005509
Rops11g02778 547 SMART efh_1 398 426 IPR002048 GO:0005509
Rops11g02778 547 SMART efh_1 512 540 IPR002048 GO:0005509
Rops11g02778 547 SMART efh_1 434 462 IPR002048 GO:0005509
Rops11g02778 547 ProSitePatterns EF-hand calcium-binding domain. 521 533 IPR018247 -
Rops11g02778 547 SUPERFAMILY EF-hand 391 538 IPR011992 -
Rops11g02778 547 FunFam calcium-dependent protein kinase 1 180 359 - -
Rops11g02778 547 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Rops11g02778 547 MobiDBLite consensus disorder prediction 1 77 - -
Rops11g02778 547 Gene3D Phosphorylase Kinase; domain 1 96 179 - -
Rops11g02778 547 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Rops11g02778 547 ProSiteProfiles EF-hand calcium-binding domain profile. 508 543 IPR002048 GO:0005509
Rops11g02778 547 PANTHER SERINE/THREONINE-PROTEIN KINASE 87 533 - -
Rops11g02778 547 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Rops11g02778 547 FunFam Calcium-dependent protein kinase 1 96 179 - -
Rops11g02778 547 CDD EFh 471 538 IPR002048 GO:0005509
Rops11g02778 547 SUPERFAMILY Protein kinase-like (PK-like) 93 374 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02778 Rops-Chr11 47841836 47846898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02778 1 547 EF-hand Containing Proteins AT3G20410 74.368 0.0 825
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Rops11g02778 Pkinase 8.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02778 K13412 - gmx:100798651 991.104