Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02773 ATGCCCTCAGCTCAGGATCCATTTTACGTTGTCAAGACCGAGATTCAAGAATCTATTGATAAGCTACAATCTACTTTTCATGAATGGGAATATACATTTGATGCCACGGAGCGACGAAATCTTACAAAGGAGGTTCTTGCTGGATGTGAAAGCATAGAGTGGCAGGTGGATGAATTGGACAAAGCAATTTCTGTAGCATCTAGAGATCCTTCTTGGTATGGAATTGATGAAGTGGAGGTTCAAAGCCGGAGGATATGGACAAGCAGTGCTCGTACTCAGGTTGGCACAATGAAGAAAGCAGTCGAAGCTGGAAAGGTCCCAAGTACAACAAGCCATGCTAGTGTAAATGAGATGCACCAAGAACTAATGAAGCTGCCAAGTTCCCATCAAACTGATACATCCAACCACTATGCTTCCCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAAATGCTTCTTATGAAGAAGCAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTGCAATACATGAAGAACTCCTTGCACAGGAAAAGATTATAGATGAACTGGGTAATGAGATGGACAGCACAACAAATCGTCTAGATTTTGTCCAAAAAAAAGTTGCAATGGTTATGAAGAAGGCTGGTGCAAAGGGCCAGATCATGATGATATTGGAAAATCTTGATTGTGATGAAAAGAGGGGAGCAATGTACTTCAAGATTTATTATAGGATTTTGACTTTGGACAAGTTAGATTGCATAAATGATGTTAGTGATATTCATTGA 801 0.3995 MPSAQDPFYVVKTEIQESIDKLQSTFHEWEYTFDATERRNLTKEVLAGCESIEWQVDELDKAISVASRDPSWYGIDEVEVQSRRIWTSSARTQVGTMKKAVEAGKVPSTTSHASVNEMHQELMKLPSSHQTDTSNHYASQDNDDFIQSESDRQMLLMKKQDEELDELSLSVQRIGGVGLAIHEELLAQEKIIDELGNEMDSTTNRLDFVQKKVAMVMKKAGAKGQIMMILENLDCDEKRGAMYFKIYYRILTLDKLDCINDVSDIH* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02773 266 CDD SNARE_Qc 157 214 - -
Rops11g02773 266 CDD SNARE_NTD_AtSYP61-like 5 102 - -
Rops11g02773 266 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Rops11g02773 266 SMART tSNARE_6 149 216 IPR000727 -
Rops11g02773 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Rops11g02773 266 FunFam Syntaxin 10 3 104 - -
Rops11g02773 266 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Rops11g02773 266 Gene3D - 2 104 - -
Rops11g02773 266 Coils Coil 192 212 - -
Rops11g02773 266 FunFam syntaxin-61 isoform X1 157 218 - -
Rops11g02773 266 Gene3D - 161 225 - -
Rops11g02773 266 PANTHER GOLGI SNARE BET1-RELATED 112 241 - -
Rops11g02773 266 SUPERFAMILY SNARE fusion complex 152 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02773 Rops-Chr11 47796352 47800853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02773 55 229 SNARE and Associated Proteins AT1G28490 68.000 1.60e-82 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02773 K08500 - gmx:100787129 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02773 11 47796352 47800853 Rops9g00342 9 4210095 4213138 PCT