Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02768 ATGGAGCACATGACGAGCGTTAACGATGCAGCAAATGATGAATTTCTTGCAATGATAGATGGCAGTGGTGGTGGTGGCGAGGGTGGTGGTGGTGGTGGAGAAGAGGTGACTTTGAAGAAGGGTCCTTGGACAACTGCAGAGGATGCCATTTTGATAGATTATGTGACAAAGCATGGTGAAGGGAATTGGAATGCAGTGCATAGGAACACAGGGTTGGCTCGATGTGGCAAGAGTTGTAGGCTCAGATGGGCTAACCATTTGAGACCCAATTTAAAGAAGGGTGCCTTCTCCCCTGAAGAAGAGAAGCTCATTGTTGAGCTTCATGCACAGTTTGGCAACAAATGGGCTCGAATGGCTGCTTTATTACCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACAAGGATCAAGCGCAGGCAGAGACAGGGTCTTCCTCTGTATTCAGATGACCATGATCATCCCACAACACCATCCACACCAACCACCCCATCCCCATGTCTTACCCCAACAGGAACAAACCCCAACACTACCACAACAAGTTTTGAGTTTTTCCATCAAAACCATCACCACCAACATCAACAACAACAACAACACCCTCTATCTCCAACTGTACCCCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGACAACCTTCCTATTCCTCTCACACTTTCTTAGACCCTACACCTTCACCTGCACCTTTACCATTATCATCTTCTGCACCTTCCCCTCACTCCTTCACCTTCCAAAGACCTGCACCAATGTTATGTAACCCACTTCGCTTCAAACGGTACCGTTCCAGTCCCAATTTCAACCTCCATTTCCCTACCTTCAACACTACTTCCTCTGCTCTCCCTGATCCTCCTGTGACAACTCATCTTGAAAGTTTCAGGTTCCCAGTTCAGCTAAACTCAAGTTGTTCTCAGTTTTTTCCAACCCCTTTTTTAGAGTCAGATCGAGGGGTGGTTTCTTCTTCTTCCTCTTCAGTTTTCCCTACCAAGTTGGAGTTCTCTTCAAACCAATTTTCAAAACCACCTTCAGAGCAAGATTTTGAGTTCAATGATCCTGCTTTTCAAACCAATAGTGGCTTGCTTGGGGATCTTCTTTTGGAAGCTCAGGCATTGGCTTCTGGCCAGAATTCAAAGAAACGAAGTTACTTGAGTTTAAATGAAGGAAATGATGCGTTTGATGGATGCCAAAGCCTTGGGGACTTCCCACTCGGTTCTGATTACTGGTCATCCACTTCAGGACCAAAACCAAAGGAAGAAGCCCCCGAACTGAGCAAATTCATGAATGAGGACTTGTCATCACTACTCACTGTAATGCCTTCTTCTTCCACTATGCAGTGTTCAGAGTGGCCTAACAACAATGCACTAGAAGTCTCCAATGTCCAATCTTCTGGTAGTGTCATGACAGATGATAATTTTGGACTTGATATTAAGCCCATAGCTTCATTGTTTCCTCTCACCAACACAACAAACCATAATGAAAACACGGGCTGCTATACGTGGGAATGCATGTGA 1536 0.4525 MEHMTSVNDAANDEFLAMIDGSGGGGEGGGGGGEEVTLKKGPWTTAEDAILIDYVTKHGEGNWNAVHRNTGLARCGKSCRLRWANHLRPNLKKGAFSPEEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDHDHPTTPSTPTTPSPCLTPTGTNPNTTTTSFEFFHQNHHHQHQQQQQHPLSPTVPHHHSPLSSPLQHRQPSYSSHTFLDPTPSPAPLPLSSSAPSPHSFTFQRPAPMLCNPLRFKRYRSSPNFNLHFPTFNTTSSALPDPPVTTHLESFRFPVQLNSSCSQFFPTPFLESDRGVVSSSSSSVFPTKLEFSSNQFSKPPSEQDFEFNDPAFQTNSGLLGDLLLEAQALASGQNSKKRSYLSLNEGNDAFDGCQSLGDFPLGSDYWSSTSGPKPKEEAPELSKFMNEDLSSLLTVMPSSSTMQCSEWPNNNALEVSNVQSSGSVMTDDNFGLDIKPIASLFPLTNTTNHNENTGCYTWECM* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02768 511 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 466 - -
Rops11g02768 511 MobiDBLite consensus disorder prediction 147 250 - -
Rops11g02768 511 FunFam MYB-related transcription factor 39 92 - -
Rops11g02768 511 FunFam Transcription factor GAMYB 95 141 - -
Rops11g02768 511 CDD SANT 95 136 IPR001005 -
Rops11g02768 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Rops11g02768 511 MobiDBLite consensus disorder prediction 195 232 - -
Rops11g02768 511 MobiDBLite consensus disorder prediction 18 39 - -
Rops11g02768 511 Gene3D - 39 92 - -
Rops11g02768 511 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Rops11g02768 511 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Rops11g02768 511 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
Rops11g02768 511 CDD SANT 42 87 IPR001005 -
Rops11g02768 511 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Rops11g02768 511 SMART sant 39 89 IPR001005 -
Rops11g02768 511 SMART sant 92 140 IPR001005 -
Rops11g02768 511 MobiDBLite consensus disorder prediction 167 186 - -
Rops11g02768 511 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Rops11g02768 511 Gene3D - 95 141 - -
Rops11g02768 511 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02768 Rops-Chr11 47732601 47735278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02768 18 499 MYB Transcription Factor Family AT4G26930 38.367 1.00e-75 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g02768 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02768 - - lja:Lj6g3v0869180.1 617.076