Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02741 ATGGCTTTCCCTTCTTTCCGTCGATCTCACTTCTGCAGCCAACTCTTTCATATCCTCTCTCAACTGTCTTCTGCTTCCACCACTTCAACTCAACCCTCCAATAATTTTCCTGATAATGGCAGTGGTAGAATGGAGCAAAAAAACCAAGAAAGGGGGCCTGAGTGCTCTGATCCTGTACCCCAGAAGGAGGTCCATGAGACCATTGAAGGGGTTGGTGACAAGGGCAAGGATTTAAGTGCCAATAATATGGTGGAAAAAAGGCAAACATCTACACGAGCAAATTATTTGAATAAGGAAAAGAGGTCAATGGATGAGTTGGAGCTGGTTCTTAAAGGGACTGATTTAAAAGAGAGAAAAATTACTGGACACTATGGAATGAAAGAAACCAGTACCAAAGATCATGGGAAATCATCTCCACTTAAGATGGTTGATGCTAGCAGAAAGAGAAAACTTGGTCCTGGTTCTCAGGAGAAGAAAGATGAGAAGAAGATTGTTGATGACAGTAAAAAGAGAAAATGTGGTTCTAGTTCTCAAGAGAAGAAAGATGAAACAAAGAAAAATTATGGAAAGCAGCGGGCAGAAACGAACAAAGAACAAGGTGTTAAAAGATTGAAGTTGGAACCAGCACAGAAACCAAAAAATGCCAATTATTGTCGCCATTTTCTCCAGGGAAGGTGCCATGAGGGTGACAAGTGCAAGTTTTCACATGATACAGTTCCTAAAACAAAATCAAAGCCATGTACTTTCTTTGCTCGTGGAATTTGCTTGAAAGGGGATGCTTGCCCTTATGATCATCATCTATCCAAGTATCCTTGTTACAATTTTGTGTCCAGTGGCTCTTGTGGCAGAGGTGATGCCTGTATGTTTTCACACCAGGTATCAACCAACCAAATCACTCCTACACCTTCAAATGTTTCCAAACCAGAGTTGAAGTCCCCACTCTTGTCAGGAAACACAAATTTCAGGATGCCACTTACTAATCATGGCTGTAGTTCTGTCCAGCAAAACCACTTTACCAATTCTAAGGGAATTCATCTACAAATCAATACAGAACAAAAGGTGGTAAACACTTTACAGAAACAGCTTATACCTGCTCCCAAAGGCATTAGGTTCCTGAAAGTTGCAAAATTATCACCAAGCCCTAGTAGTACACTGAAACAAGGCATGGTGACACCAAACAAGGAAAGTCTTGTAACAAATGGGACCCGTGCAGATCAAAGTGCATCTGGCACAACTCAAAACAAGGTGGAAATTCCAAAGAAATCGATACCTAAAGGGATTAAATTTCTATCTTTTGGCAAAGGTCCTGTTTGCAGTTTTAGGAGTCCTGTTTGCTCCAATGTAAATAGGGAAAATAGTGTCAACTCGTCTCAGTTAATTAATTTTGTTTTGCCTAAGAAAGCAAGTACATCTATGAATAAGGATGATTCAAATGTAAAGCGCCATATGAATTAA 1455 0.4021 MAFPSFRRSHFCSQLFHILSQLSSASTTSTQPSNNFPDNGSGRMEQKNQERGPECSDPVPQKEVHETIEGVGDKGKDLSANNMVEKRQTSTRANYLNKEKRSMDELELVLKGTDLKERKITGHYGMKETSTKDHGKSSPLKMVDASRKRKLGPGSQEKKDEKKIVDDSKKRKCGSSSQEKKDETKKNYGKQRAETNKEQGVKRLKLEPAQKPKNANYCRHFLQGRCHEGDKCKFSHDTVPKTKSKPCTFFARGICLKGDACPYDHHLSKYPCYNFVSSGSCGRGDACMFSHQVSTNQITPTPSNVSKPELKSPLLSGNTNFRMPLTNHGCSSVQQNHFTNSKGIHLQINTEQKVVNTLQKQLIPAPKGIRFLKVAKLSPSPSSTLKQGMVTPNKESLVTNGTRADQSASGTTQNKVEIPKKSIPKGIKFLSFGKGPVCSFRSPVCSNVNRENSVNSSQLINFVLPKKASTSMNKDDSNVKRHMN* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02741 484 Pfam CCCH-type zinc finger 218 237 IPR041367 -
Rops11g02741 484 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 50 474 IPR045124 GO:0003723|GO:0045892
Rops11g02741 484 Gene3D - 175 241 - -
Rops11g02741 484 MobiDBLite consensus disorder prediction 24 93 - -
Rops11g02741 484 SMART c3hfinal6 241 267 IPR000571 GO:0046872
Rops11g02741 484 SMART c3hfinal6 269 293 IPR000571 GO:0046872
Rops11g02741 484 SMART c3hfinal6 213 238 IPR000571 GO:0046872
Rops11g02741 484 ProSiteProfiles Zinc finger C3H1-type profile. 212 239 IPR000571 GO:0046872
Rops11g02741 484 SUPERFAMILY CCCH zinc finger 242 266 IPR036855 GO:0046872
Rops11g02741 484 SUPERFAMILY CCCH zinc finger 270 298 IPR036855 GO:0046872
Rops11g02741 484 Gene3D - 242 308 - -
Rops11g02741 484 MobiDBLite consensus disorder prediction 44 73 - -
Rops11g02741 484 ProSiteProfiles Zinc finger C3H1-type profile. 241 268 IPR000571 GO:0046872
Rops11g02741 484 SUPERFAMILY CCCH zinc finger 212 237 IPR036855 GO:0046872
Rops11g02741 484 MobiDBLite consensus disorder prediction 24 43 - -
Rops11g02741 484 ProSiteProfiles Zinc finger C3H1-type profile. 271 294 IPR000571 GO:0046872
Rops11g02741 484 MobiDBLite consensus disorder prediction 120 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02741 Rops-Chr11 47176110 47179827 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g02741 zf-CCCH_4 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02741 - - aprc:113854397 440.269