LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops11g02740	ATGGAAACCACCACCTCCAATGATGCCATGGATAACAACTCTAATGCTACAGTTTCACATTCTTCTCCAGTCTTGTCGTTTAATGGTAAACCACTAATCATGGATGAGATGGATTTCTTTGCAGAGAAAAAGACAAGTCCAGTTAATGACCAAATGGTGCAACAAATGGAGCTTCAAGTAGATACTAGTTTAGATCTCCTTACAAAAATTTCCCCTAGCAACAGATCAACAGTGGAAGATGGAGAGGCATCAGAGGCCAAGGATGACAAGAGAAATGAGTTTGTTGCTTTGCTAGCAGAATTGCACCAAATGAATGCTGAAAATCAACGTTTGAGAGAGCTGGTTGATAGGGTGAGCAATGATTACAATGCCCTACAAAACCATCTTATGAAGTTGATGCAGAAACAGCATAAACATGAGATTGATAAGGAAGCCAAAGGGGAGAAGCGTAAAAGAGATGGTATGATTCCAAGGCCATTCTTGGACATTGTTTTAGCTGAAAAGGAAGAGCCTTCACAGCAATATTCTTCAGAGGGAAAACTGATAGAAAGCAAGACTCAGAAGATTTGCACCAGTGGAGATATTATTCAGTTGGACACACCAGACAAACTAGATTCTGGTGCAAAATCCACAAGGGAAACATTTCCAGGGTGGCTCTCAAACGAAGTCACGAGGTTGAGTTCTATTAGGGATGTTGATCAAGCATCAGAAACCATGTCAATGATGAAGAAAGCCCGTGTATCAGTTCGAGTAAGATCAGAATCTTCAATGATTTCAGATGGATGTCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCACGAGCTTATTATCGTTGCACCATGGGAACTGGTTGTCCAGTTCGAAAGCAAGTACAAAGGTGTGCTGAAGATAGAAGTGTGTTGGTCACAACATATGAAGGGCAACATAACCATCCACTCCCTCCCACTGCTAAGACAATGGCATCAACCACATCTGCAGCTGCATCAGTGCTTCTTTCAGGGTCAATGTCAAGTGGAGATGGCCTAATAAATCCAACCATATTAGAAAGTGCAACACTACCTTCCTTACAGAACATGGCAACCCTTTCTGCTTCAGCTCCATTTCCAACTATCACATTGGATCTCACACAAAATGCTACCAATTCCTCACAGCCACAAGGGGCACCACAAGGCCAAGTTAGTCTCCTTCCCTCACTTTTGGCTCAGAAGTTTATGTCAACTCCAAACATTTTTGGGCAGGTCCAGTGTGAACAAACTAAACTTTCTAGCCTACAATGGTCTCAGGGAATGGAATCAGCTTCATTTGCAGACACTGTAAATGCAACAACAGCTGCTATCACTGCAGACCCGAACATCACTGCAGCTCTTGTGGCTGCAGTAACATCCATCATTGGAAGTTCACATCCTAACAATAATGGTACAAGTGGAGACCAGCAAGTACAATGA	1461	0.4271	METTTSNDAMDNNSNATVSHSSPVLSFNGKPLIMDEMDFFAEKKTSPVNDQMVQQMELQVDTSLDLLTKISPSNRSTVEDGEASEAKDDKRNEFVALLAELHQMNAENQRLRELVDRVSNDYNALQNHLMKLMQKQHKHEIDKEAKGEKRKRDGMIPRPFLDIVLAEKEEPSQQYSSEGKLIESKTQKICTSGDIIQLDTPDKLDSGAKSTRETFPGWLSNEVTRLSSIRDVDQASETMSMMKKARVSVRVRSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTGCPVRKQVQRCAEDRSVLVTTYEGQHNHPLPPTAKTMASTTSAAASVLLSGSMSSGDGLINPTILESATLPSLQNMATLSASAPFPTITLDLTQNATNSSQPQGAPQGQVSLLPSLLAQKFMSTPNIFGQVQCEQTKLSSLQWSQGMESASFADTVNATTAAITADPNITAALVAAVTSIIGSSHPNNNGTSGDQQVQ*	487

Showing 1 to 1 of 1 entries

Previous1Next

Annotation information

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops11g02740	486	Pfam	WRKY DNA -binding domain	260	317	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Rops11g02740	486	Gene3D	WRKY domain	243	320	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Rops11g02740	486	FunFam	probable WRKY transcription factor 31	243	320	-	-
Rops11g02740	486	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	66	479	IPR044810	GO:0003700
Rops11g02740	486	SMART	WRKY_cls	258	318	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Rops11g02740	486	ProSiteProfiles	WRKY domain profile.	253	319	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
Rops11g02740	486	SUPERFAMILY	WRKY DNA-binding domain	251	319	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
Rops11g02740	486	Coils	Coil	87	135	-	-
Rops11g02740	486	MobiDBLite	consensus disorder prediction	1	24	-	-

Showing 1 to 9 of 9 entries

Previous1Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops11g02740	Rops-Chr11	47111451	47114998	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Previous1Next

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops11g02740	36	483	WRKY Transcription Factor Family	AT1G62300	45.287	5.80e-112	340

Showing 1 to 1 of 1 entries

Previous1Next

Transcription factors information

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Rops11g02740		WRKY	4.3e-24	CL0274

Showing 1 to 1 of 1 entries

Previous1Next

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops11g02740	-		-	gmx:100779533	494.197

Showing 1 to 1 of 1 entries

Previous1Next