Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02740 ATGGAAACCACCACCTCCAATGATGCCATGGATAACAACTCTAATGCTACAGTTTCACATTCTTCTCCAGTCTTGTCGTTTAATGGTAAACCACTAATCATGGATGAGATGGATTTCTTTGCAGAGAAAAAGACAAGTCCAGTTAATGACCAAATGGTGCAACAAATGGAGCTTCAAGTAGATACTAGTTTAGATCTCCTTACAAAAATTTCCCCTAGCAACAGATCAACAGTGGAAGATGGAGAGGCATCAGAGGCCAAGGATGACAAGAGAAATGAGTTTGTTGCTTTGCTAGCAGAATTGCACCAAATGAATGCTGAAAATCAACGTTTGAGAGAGCTGGTTGATAGGGTGAGCAATGATTACAATGCCCTACAAAACCATCTTATGAAGTTGATGCAGAAACAGCATAAACATGAGATTGATAAGGAAGCCAAAGGGGAGAAGCGTAAAAGAGATGGTATGATTCCAAGGCCATTCTTGGACATTGTTTTAGCTGAAAAGGAAGAGCCTTCACAGCAATATTCTTCAGAGGGAAAACTGATAGAAAGCAAGACTCAGAAGATTTGCACCAGTGGAGATATTATTCAGTTGGACACACCAGACAAACTAGATTCTGGTGCAAAATCCACAAGGGAAACATTTCCAGGGTGGCTCTCAAACGAAGTCACGAGGTTGAGTTCTATTAGGGATGTTGATCAAGCATCAGAAACCATGTCAATGATGAAGAAAGCCCGTGTATCAGTTCGAGTAAGATCAGAATCTTCAATGATTTCAGATGGATGTCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCACGAGCTTATTATCGTTGCACCATGGGAACTGGTTGTCCAGTTCGAAAGCAAGTACAAAGGTGTGCTGAAGATAGAAGTGTGTTGGTCACAACATATGAAGGGCAACATAACCATCCACTCCCTCCCACTGCTAAGACAATGGCATCAACCACATCTGCAGCTGCATCAGTGCTTCTTTCAGGGTCAATGTCAAGTGGAGATGGCCTAATAAATCCAACCATATTAGAAAGTGCAACACTACCTTCCTTACAGAACATGGCAACCCTTTCTGCTTCAGCTCCATTTCCAACTATCACATTGGATCTCACACAAAATGCTACCAATTCCTCACAGCCACAAGGGGCACCACAAGGCCAAGTTAGTCTCCTTCCCTCACTTTTGGCTCAGAAGTTTATGTCAACTCCAAACATTTTTGGGCAGGTCCAGTGTGAACAAACTAAACTTTCTAGCCTACAATGGTCTCAGGGAATGGAATCAGCTTCATTTGCAGACACTGTAAATGCAACAACAGCTGCTATCACTGCAGACCCGAACATCACTGCAGCTCTTGTGGCTGCAGTAACATCCATCATTGGAAGTTCACATCCTAACAATAATGGTACAAGTGGAGACCAGCAAGTACAATGA 1461 0.4271 METTTSNDAMDNNSNATVSHSSPVLSFNGKPLIMDEMDFFAEKKTSPVNDQMVQQMELQVDTSLDLLTKISPSNRSTVEDGEASEAKDDKRNEFVALLAELHQMNAENQRLRELVDRVSNDYNALQNHLMKLMQKQHKHEIDKEAKGEKRKRDGMIPRPFLDIVLAEKEEPSQQYSSEGKLIESKTQKICTSGDIIQLDTPDKLDSGAKSTRETFPGWLSNEVTRLSSIRDVDQASETMSMMKKARVSVRVRSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTGCPVRKQVQRCAEDRSVLVTTYEGQHNHPLPPTAKTMASTTSAAASVLLSGSMSSGDGLINPTILESATLPSLQNMATLSASAPFPTITLDLTQNATNSSQPQGAPQGQVSLLPSLLAQKFMSTPNIFGQVQCEQTKLSSLQWSQGMESASFADTVNATTAAITADPNITAALVAAVTSIIGSSHPNNNGTSGDQQVQ* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02740 486 Pfam WRKY DNA -binding domain 260 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02740 486 Gene3D WRKY domain 243 320 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02740 486 FunFam probable WRKY transcription factor 31 243 320 - -
Rops11g02740 486 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 66 479 IPR044810 GO:0003700
Rops11g02740 486 SMART WRKY_cls 258 318 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02740 486 ProSiteProfiles WRKY domain profile. 253 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Rops11g02740 486 SUPERFAMILY WRKY DNA-binding domain 251 319 IPR036576 GO:0003700|GO:0006355|GO:0043565
Rops11g02740 486 Coils Coil 87 135 - -
Rops11g02740 486 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02740 Rops-Chr11 47111451 47114998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02740 36 483 WRKY Transcription Factor Family AT1G62300 45.287 5.80e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Rops11g02740 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02740 - - gmx:100779533 494.197