Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02739 ATGGCTTTCCCTTCTCACTTCCGCAGCCAAACTCAACACTCCCTCTTTCACATGTTTTCTCAACTTTCTTCTGCTTCCACCATTCCAACTCAACCCCTTAATAACGTTCCTGATAATGGCAATGGTAGAATGGGACAAGAAAACCAGAAGAAAATACAGGAGACCATTGAAGTGGTTGGAGACCACAATAAGATAGAAATACAGAAGGACTTAAGTGCCAATAAGGTGGTTTTAAAAGGGACTGAAAATGAAGATTTAGAAGAGGGAGAAATTCGAGACTTTGGAATGGAAGAAACCACTCAAAAAGTTCATGAGAACTCATCTCCACTTAAGATTGTTGATTCAAGTAAAAAGAGAAAACATGATCGTGGTTCTCAGGAGAAGAAAGATGAAACAAAGAAAAATTATGGAAAGCAGCGAGCAGAAAACAACAAAGAACAAGGTGCTAAGAGGTTGAGGTTGCAACCCGTGCAGAAACCAAAAGTTGTCAATTATTGTCGCCATTTTAAGGAGGGAAGGTGCTATGAGGGTGACAAGTGCAAGTTTTCACATGATACAGTTCCTAAAACAAAATCAAAGCCATGTACTTTCTTTGCTCGTGGAACTTGCTTGAAAGGGGATGCTTGCCCTTATGATCATCACCTCTCCAAGTATCCTTGTTATAATTTTGTGTCCAGTGGCTCTTGTGGCAGAGGTGATGCCTGTATGTTTTCACACCAGGTACCAACCAACCAAATCACTCCTACACCTTCAAATGTTTCCAAACCAGAGTTGAAGTCTCCACTCTTGTCAGGAAACACAAATTCCAGGATGCCACTTAACAATCCTGGCTGTAGTTCTGTTAAGCAAAACCACTCTATCAATTCCAAGGGAACTCATCTACACATCAATACAGAACAAAAGGTGGCAAACACTTTACAGAAACAGCCTATACCTGCACCCAAAGGAGTTAGGTTCCTGAATGTTGCAGAATTATCACCAAGCCCTAGCAGTACACTGAAACAAGGCATGGTAACACCAAACAAGGAATGTCTTGTACAAAATGGGACCCGTGCAGATCAAAGTGCATCTAGCACAAGTCAAAACAAGGTGGAAATTCCTAAGAAATCGACACCTAAAGGAGTTAACTTTCTTGCTTTTGGCAAAGGTCGTCCTGTTTGCAGTTTTAGAAGTCCTGTTAGCTCCAATGTAAATAGGGAAAGTAGTACACTGAAACAAGGTGTAGATCAACGTGCATCTGGCGCAACTCAAAATAAGGTGGAAAATCCAAAGAAATCGCCAGTTGTGATACCAAAAGGAATTAACTTTCTTTCTTTTGGCAAAGGTCCTGTTTGTAGTTTTAGAAGTCCTGTTAGTTCAAATGTAAATAGGGAAAATAGCGTCAAGTTGTCTCAGAAGGTACAAGATGAAGAAGCACAAAGACTTGAGGACAAAAATGATAAGGTTAGACTTGAGGACAATTATGATCCCATGACTGGATGGATGCATGGAGCTCAAATGGTCACATTTAATATGCAGGTTGGCATTCAAGATGTTAGGGCAGAGGTTATGCCTGCAAGAAAGGCTGATGTTGTTCATTCATTCCAAAAAGATGGAAGTATAGTTGCAATGGTGGGTGATGGTATCAATGAGTCTCCCGCATTAGCTGCTGCAGATGTTGGTATGGTAATTGGGGCTGGTACAGATATTGCAATAGAAGCTGCTAACTATGTGTTGATGAGGGATAATTTGGAAGATGTGATCACAGTCATTGATCTTTCTAGGAAGACCTTTTCTCGTATACGATTGAATTATGTATTCGCGATGGCCTATAATATTATTGTTGTACCAGTTGCTGCTGGGGTTTTATTTCCTTCATTGGGGATCGAGTTGCCGCCATGGGTTGCTGGTGCATGCATGGCTCTCTCATCCGTAGCTGCCAATTCATTGTAA 1932 0.4105 MAFPSHFRSQTQHSLFHMFSQLSSASTIPTQPLNNVPDNGNGRMGQENQKKIQETIEVVGDHNKIEIQKDLSANKVVLKGTENEDLEEGEIRDFGMEETTQKVHENSSPLKIVDSSKKRKHDRGSQEKKDETKKNYGKQRAENNKEQGAKRLRLQPVQKPKVVNYCRHFKEGRCYEGDKCKFSHDTVPKTKSKPCTFFARGTCLKGDACPYDHHLSKYPCYNFVSSGSCGRGDACMFSHQVPTNQITPTPSNVSKPELKSPLLSGNTNSRMPLNNPGCSSVKQNHSINSKGTHLHINTEQKVANTLQKQPIPAPKGVRFLNVAELSPSPSSTLKQGMVTPNKECLVQNGTRADQSASSTSQNKVEIPKKSTPKGVNFLAFGKGRPVCSFRSPVSSNVNRESSTLKQGVDQRASGATQNKVENPKKSPVVIPKGINFLSFGKGPVCSFRSPVSSNVNRENSVKLSQKVQDEEAQRLEDKNDKVRLEDNYDPMTGWMHGAQMVTFNMQVGIQDVRAEVMPARKADVVHSFQKDGSIVAMVGDGINESPALAAADVGMVIGAGTDIAIEAANYVLMRDNLEDVITVIDLSRKTFSRIRLNYVFAMAYNIIVVPVAAGVLFPSLGIELPPWVAGACMALSSVAANSL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02739 643 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 487 506 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Rops11g02739 643 MobiDBLite consensus disorder prediction 349 369 - -
Rops11g02739 643 MobiDBLite consensus disorder prediction 390 423 - -
Rops11g02739 643 Pfam haloacid dehalogenase-like hydrolase 507 552 - -
Rops11g02739 643 Gene3D - 131 188 - -
Rops11g02739 643 SUPERFAMILY HAD-like 506 639 IPR036412 -
Rops11g02739 643 MobiDBLite consensus disorder prediction 98 151 - -
Rops11g02739 643 Pfam CCCH-type zinc finger 166 185 IPR041367 -
Rops11g02739 643 SMART c3hfinal6 189 215 IPR000571 GO:0046872
Rops11g02739 643 SMART c3hfinal6 217 241 IPR000571 GO:0046872
Rops11g02739 643 SMART c3hfinal6 161 186 IPR000571 GO:0046872
Rops11g02739 643 SUPERFAMILY CCCH zinc finger 218 245 IPR036855 GO:0046872
Rops11g02739 643 Coils Coil 465 487 - -
Rops11g02739 643 ProSiteProfiles Zinc finger C3H1-type profile. 219 242 IPR000571 GO:0046872
Rops11g02739 643 PRINTS P-type cation-transporting ATPase superfamily signature 178 192 - -
Rops11g02739 643 PRINTS P-type cation-transporting ATPase superfamily signature 538 557 - -
Rops11g02739 643 PRINTS P-type cation-transporting ATPase superfamily signature 561 573 - -
Rops11g02739 643 NCBIfam HAD-IC family P-type ATPase 514 620 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops11g02739 643 ProSiteProfiles Zinc finger C3H1-type profile. 160 187 IPR000571 GO:0046872
Rops11g02739 643 SUPERFAMILY CCCH zinc finger 190 214 IPR036855 GO:0046872
Rops11g02739 643 Gene3D - 494 606 IPR023214 -
Rops11g02739 643 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 80 387 IPR045124 GO:0003723|GO:0045892
Rops11g02739 643 SUPERFAMILY CCCH zinc finger 160 185 IPR036855 GO:0046872
Rops11g02739 643 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Rops11g02739 643 MobiDBLite consensus disorder prediction 111 149 - -
Rops11g02739 643 Gene3D - 189 255 - -
Rops11g02739 643 MobiDBLite consensus disorder prediction 390 426 - -
Rops11g02739 643 MobiDBLite consensus disorder prediction 349 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02739 Rops-Chr11 47095971 47101432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02739 506 634 Primary Pumps ATPases AT5G44790 79.845 2.33e-63 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g02739 Hydrolase 4.1e-08 CL0137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02739 - - aprc:113854397 374.015