Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02734 ATGGCTTTCCCTTGTTTCCGTCGATCTCACTTCCGCAGCCAAACACACCACACCCTCTTTCACATCCTCTCTCAACTTTCTTCTGCTTCCACCACTCCAACTAAACCCTTCAATAATGTTCCTGATAATGGCAATGGTAGAATGGGGCAAGAAAACCAGGAAAGGGAGCCTGAGTGTGCTGAATTTGTTGGTTCTGATTTCATGGATCCCAAGGATCCTGTACCCCAGAACGAAATGCAGGAGGCCCATGGGACCACTGAAGGGGTTGGAGACAAGGGCAAGGATTTTAGTGCCAATAAGACGGTCCTAGATCATATAGAGGGTCTGATGGGAATAGAGGAAACGTATACACAAGCTAATGGTTTGAATGAGGAACAAAGGCTAATGGATGAGTTGGAGCTGGTTGTGAAAGGGACTGAAGATCCTGTTTGTGATGATGGTTTAATCCCCTTGAACTCGGGATTAGGTGAGAAACAGAATAATGGCAATGAAGTTGAGGTGATGGATTACCAAGTAGAGCATGTTGAATTTATGCATTCTGATGCAAACACATCTGGAAACGCAAGTAAGTTGCAAGAACCGGGAGAGCTTAATCAACTTGCCTCAGAAGGCTTACAACCGTCTTTGATGTTTAATGTGTCCACACCAACAGAGGAACAAGCCTCTGCATTGGTAATTAGAGCATCAAGTTCAAAGCATGAAAGTCAGCAAAAGGAAACAGAATTGGTGAAATCAGTTTTTGCTGCAGTGGGATCCCTTCCCACCACTGAAGAGGGTGAGCTTGAGAAGGAAGAGCAATATGGTCAAAAGGTTGCTGAAGCAATGCACATTTCTTTAGATCTGGATATGGATAGTGAAGCATTGAATAAGAGTGAAGAGGGTGGATTACTGGATTCTACTAATATGAAAGATAAATCTGAAACGTGGAATGAAAGAGAGAAATTAGAAAAATTAATCAGTATGAACAATGCAACAAATTCTTCCAATATTCTGATTGAAGATGAAGATTTAGAAGAGGGAGAAATTCCTGGAGACTTTGGAATGGATGGCAATATTCTGATTCAAAATCAAGTCTTGCACACAGATGTTTTGGAAGAAACCATGACCAAAGACCATGAGAACTCATCTCCATTAAAGCAGATGGTTTATGCCAGGAGAAAGAGAAAACAATGTCCTGGTTCTGAGGAGAAGAAAGATGGAAAGAAGCAGATGGTTGATGCTGGGACAAAGAAAAAATGTGGTCATGGTTCTGACGAGAAGAAAGAGGAAACAAAGATGGTTGATGCCAGTAAAAAGAAAAAGTGTGGTCGTGGTTCTAAGAAGAAGAAAGATAAAACGATGCAAATGGTTGATGCCAGTACAGAGAAAAAACATGGTCCTGGTTCTGAGGTGAAGAATGATGAAACGAAGATGGTCGATGATGCCAGTAAAAAGAAAAAACGTGGCCCTGGTTCTGAGGAGAAGAAAGATAGAAGGAAGATAAATTATCGAAAGAATCGAGCAGAAAAGAACAGAGAAGAAGGCGTTAAAAGGTTGAAGTTGCCTCCAATACAGAAACCAAAAATTGTCCCATATTGTCGCCATTATCTCGAGGGAAAGTGCTACGAGGGTGACAAGTGCAAGTTTTCACATGATACAGTTCCTTTGACGAAATCCACGCCATGTAATTTCTTTGCTCGTGGCACTTGCTTGAAAGGGGATGGTTGCCCATTTGATCATCAGCTATCCAAGTATCCTTGCTACAATTTTGTGTCCAGTGGTTCTTGTGGCAGAGGTGATGCTTGTATGTTTTCACACCAGGTACCAACCAACCAAGTTATTCCTATGCCTTCAACTGTTTCCAAACCAGAGTTGAAGTCTCCACTGTTGTCAGGAAATACAAATTTCAGTATGCCACTTAACAATCATGGCTGTAGTTCTGTCCAGCAACCAGAGTTGAAGTCTCCACTGTTGTCAGGAAATACAAATTTCAGTATGCCACTTAACAATCATGGCTGTAGTTCTGTCCAGCAAAACCACTCTACCAATTCTAAGGGAATTCATTCTCACATCAATACACAACATAAGATGACAGACACTTCACAAAAACAGCCTACACCTACACCCAAAGGAGTTAGGTTCATGAATGTTGCAAAATTATCACCCAGCCCTAGTACACTGAAACAAGGCATGGTAACACCAAACAAGGAAAGTCTTGTCCAAAATGGGACCCGTGCAAATCAAAGTGCATCTGGCACAATTCAAAACATGGTTGAAATTGCTAAGAAATCGCCAGCTGTGACACCTAAAGGAATTAACTTTCTTACTTTTGGCAAAGGTGCTGTTTGCAGTTTTAGAAGTCCTGTTAGCTCCAATAGGGAAAATAGTATCAAGCTGTCCCCGTTAATTAATTTTGTTTTGCCTCAGAAAACAAGTTCATCTCTAAATAAGGATGATTCCAGCAAAGTGAGTGACAGAACAAAACAAAATGTACCACTAACTGATCCATTCTCAAATGAGATTTTAGACAAAAATCAATATGTGGCGGAAGGAATGAAATCAAAGTCTCCAGGGAAAGCTTCAACAGATGATTCTATGAGGAATCACAGCAATTGTAAATCAGTTCAAGAGGGTAAAAAGGCAAATGATAATTCTCAAACTTCTAGTCAGACCTCAGCTATGCTTCCTGTTCATCCATTTGTTTCACATCAGTCTTCAGAACGCCCAGTATCTGGATATCATAAACATGCGTCAAACTCAGGTCAAAGGGCACTCTTATCGACTTTAGCTTTTGCAGCTGAACTTGAATCAGATATCAAGATGAAATGCCCTGCTGCAGCTTTACTTTGGAACTGTTCTATTTTTTTTTTGCAGCATAATTGCAGGTCATGCACCCATGCTGGTCTTTATGATGATAACTTTTCAAAGTTGTTACATAACATGGAGAGGATATCTCCCTCTACCTGCCTCTCCTGCAATATCTTCAATGTTCTTACTTTTGGAAGTGATTTGAAGTGGTTAACCCCGTCCCCTGTTGCTTCTGCAGGTCAATATCTATAA 3039 0.409 MAFPCFRRSHFRSQTHHTLFHILSQLSSASTTPTKPFNNVPDNGNGRMGQENQEREPECAEFVGSDFMDPKDPVPQNEMQEAHGTTEGVGDKGKDFSANKTVLDHIEGLMGIEETYTQANGLNEEQRLMDELELVVKGTEDPVCDDGLIPLNSGLGEKQNNGNEVEVMDYQVEHVEFMHSDANTSGNASKLQEPGELNQLASEGLQPSLMFNVSTPTEEQASALVIRASSSKHESQQKETELVKSVFAAVGSLPTTEEGELEKEEQYGQKVAEAMHISLDLDMDSEALNKSEEGGLLDSTNMKDKSETWNEREKLEKLISMNNATNSSNILIEDEDLEEGEIPGDFGMDGNILIQNQVLHTDVLEETMTKDHENSSPLKQMVYARRKRKQCPGSEEKKDGKKQMVDAGTKKKCGHGSDEKKEETKMVDASKKKKCGRGSKKKKDKTMQMVDASTEKKHGPGSEVKNDETKMVDDASKKKKRGPGSEEKKDRRKINYRKNRAEKNREEGVKRLKLPPIQKPKIVPYCRHYLEGKCYEGDKCKFSHDTVPLTKSTPCNFFARGTCLKGDGCPFDHQLSKYPCYNFVSSGSCGRGDACMFSHQVPTNQVIPMPSTVSKPELKSPLLSGNTNFSMPLNNHGCSSVQQPELKSPLLSGNTNFSMPLNNHGCSSVQQNHSTNSKGIHSHINTQHKMTDTSQKQPTPTPKGVRFMNVAKLSPSPSTLKQGMVTPNKESLVQNGTRANQSASGTIQNMVEIAKKSPAVTPKGINFLTFGKGAVCSFRSPVSSNRENSIKLSPLINFVLPQKTSSSLNKDDSSKVSDRTKQNVPLTDPFSNEILDKNQYVAEGMKSKSPGKASTDDSMRNHSNCKSVQEGKKANDNSQTSSQTSAMLPVHPFVSHQSSERPVSGYHKHASNSGQRALLSTLAFAAELESDIKMKCPAAALLWNCSIFFLQHNCRSCTHAGLYDDNFSKLLHNMERISPSTCLSCNIFNVLTFGSDLKWLTPSPVASAGQYL* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02734 1012 Gene3D - 551 614 - -
Rops11g02734 1012 ProSiteProfiles Zinc finger C3H1-type profile. 579 602 IPR000571 GO:0046872
Rops11g02734 1012 MobiDBLite consensus disorder prediction 851 885 - -
Rops11g02734 1012 ProSiteProfiles Zinc finger C3H1-type profile. 549 576 IPR000571 GO:0046872
Rops11g02734 1012 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 259 938 IPR045124 GO:0003723|GO:0045892
Rops11g02734 1012 SUPERFAMILY CCCH zinc finger 521 545 IPR036855 GO:0046872
Rops11g02734 1012 MobiDBLite consensus disorder prediction 845 885 - -
Rops11g02734 1012 MobiDBLite consensus disorder prediction 442 506 - -
Rops11g02734 1012 Pfam CCCH-type zinc finger 525 545 IPR041367 -
Rops11g02734 1012 Gene3D - 487 550 - -
Rops11g02734 1012 MobiDBLite consensus disorder prediction 28 48 - -
Rops11g02734 1012 SMART c3hfinal6 577 601 IPR000571 GO:0046872
Rops11g02734 1012 SMART c3hfinal6 549 575 IPR000571 GO:0046872
Rops11g02734 1012 SMART c3hfinal6 521 546 IPR000571 GO:0046872
Rops11g02734 1012 MobiDBLite consensus disorder prediction 388 433 - -
Rops11g02734 1012 SUPERFAMILY CCCH zinc finger 578 605 IPR036855 GO:0046872
Rops11g02734 1012 MobiDBLite consensus disorder prediction 805 830 - -
Rops11g02734 1012 SUPERFAMILY CCCH zinc finger 552 574 IPR036855 GO:0046872
Rops11g02734 1012 ProSiteProfiles Zinc finger C3H1-type profile. 520 547 IPR000571 GO:0046872
Rops11g02734 1012 MobiDBLite consensus disorder prediction 368 506 - -
Rops11g02734 1012 MobiDBLite consensus disorder prediction 28 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02734 Rops-Chr11 47061584 47070524 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g02734 zf-CCCH_4 1.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02734 - - aprc:113854397 933.324