Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02731 ATGGGTCGTGGAGGAGGAGCCGCCACGGTCGCATTTAATGAACCCGGTTCAAGGCCGGTTTTTTTCAAAGAGCCGAGATACCGGGGCGTGAGAAAAAGACCGTGGGGCCGGTTCGCCGCCGAGATCAGAGACCCTTTGAAGAAAGCAAGGGTGTGGCTTGGAACCTTCGACACCGCCGAGGAGGCGGCTCGTGCTTACGACGCCGCGGCCAGAAATCTCCGGGGACCAAAAGCGAAGACCAATTTCCCTCTCTCAGCTCCTTTTTACCACTCCGCCGGCGCTGATCCATTTTCCGATCACCGGTTCTACGCCGCCGGTTCCGCCGGCGAGGGGTTTCAAGATCACCGGAGACCTACCTCCAGTGGCATGAGCAGTACCGTTGAGTCGTTTAGTGGTCCCCGTCCGGCAGGACCACCGGCGCCTCCGTTGGCCTCCACCCGGAGATACCCTCGTTCCCCACCCGTAGTGCCGGAGGATTGCCGGAGCGACTGCGACTCCTCGTCGTCGGTGGTCGATGATGGTGACGGCGAAAACGTGGCTTCATCGCCGTTGATGTCGTTTAGACGCCAGCCGTTGCCGTTTGATCTAAACGCGCTGCCGTTGGATGATGCTGACGTGGCGAACGGTGGCGGTATTGGTGATGATCTGCACTGCACCGTTCTGTGCCTCTGA 672 0.6027 MGRGGGAATVAFNEPGSRPVFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDAAARNLRGPKAKTNFPLSAPFYHSAGADPFSDHRFYAAGSAGEGFQDHRRPTSSGMSSTVESFSGPRPAGPPAPPLASTRRYPRSPPVVPEDCRSDCDSSSSVVDDGDGENVASSPLMSFRRQPLPFDLNALPLDDADVANGGGIGDDLHCTVLCL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02731 223 MobiDBLite consensus disorder prediction 134 148 - -
Rops11g02731 223 FunFam Ethylene-responsive transcription factor 2 26 84 - -
Rops11g02731 223 CDD AP2 25 85 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 MobiDBLite consensus disorder prediction 109 182 - -
Rops11g02731 223 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 MobiDBLite consensus disorder prediction 117 131 - -
Rops11g02731 223 Gene3D AP2/ERF domain 26 85 IPR036955 GO:0003700|GO:0006355
Rops11g02731 223 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 26 177 - -
Rops11g02731 223 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 SMART rav1_2 26 91 IPR001471 GO:0003700|GO:0006355
Rops11g02731 223 SUPERFAMILY DNA-binding domain 26 85 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02731 Rops-Chr11 46996393 46997533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02731 23 223 AP2-EREBP Transcription Factor Family AT1G50640 57.477 3.45e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops11g02731 AP2 3.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02731 K09286 - gmx:100782025 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02731 11 46996393 46997533 Rops11g02731 11 46996393 46997533 ECH
Rops11g02731 11 46996393 46997533 Rops9g00302 9 3833519 3834491 PCT