Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02729 ATGGGTAGCGAAGAAGAGAAGGTTCTGGAGAATCAACTTGAGCTTCAATTGCAAGAACAAAGGGATTCTCTCTCTGCTATCGATCAAGCTCTTCTCTCTGATCCAACCAACACCGAGTTACTCGCGGTTCATGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACCTAAAACGTGTGAGATTATTACAGGAAGCAGATTCAGTGCTGCACAGCACTAATATTTTTGCCGAAGAAGAGAAAGTGGAGCCCCTTGGTCCCACAGATGTTGAACCAGAGCCATTGGAGGAAAAATGCTATTCTGTTGGATCTAAATGTAGATTCCGTCACAAAGATGGGCGCTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAGATTTCGTTCCTTACTCCTACATCTGAGAATATGATGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTATCACATGGCATTGATGTTCAATTGTCCTCCCTTAAGAAATATGTCCCAACAGTCTGGAAGCTGTCCCTTGTGGGGTCAAGTATATGGGCAGTCTCAAATTCAAATGCAAATGCAGGCATTTGGAGAGAAGCTGAGCTTGAGTCCTGGGATGAAAAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGCTTGGTGCCAAAGAAATGGTATTATCTGAGTATGCAGAGGTGAATGATTTGGAGAGTGATTCCAGCCTAGAACAATCCGATTCCAGCGACTATGAGGAAGAGGAATCGCAAGGTTTAGGATTTCTTGAGAGTACCAACCTACAGAGAGGTATTCAAACTGAAACTGCTATATTTGCTAAGTGGGAGCACCACACTAGAGGTGTAGCTTCCAAAATGATGTTTAATATGGGTTACAAAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATCCTAAACCCCATACCAGTGAAGGTCCTACCACCAAAGCAATCCTTAGATCATGCACTTGAGTCTCATAAAGGAGAAGAGAACATAGAGAAGCAACGTAAGAAAAGGAGCAGAGGTGGTAAGAGAAAACGTGATAAGAAATTCGCCGAAGCGATTCGTGTAGCAAAAGAGGAAGAAGAATCGGTGTCAGATATGTTCACACTGATAAATAATCAGCTGGCAATGCATGGTGAAGCTTCCAATGATGGATCAATGAAGAAGAAGCAAAATAAAGGTTCAGGTGAAGATAAAAAGGTGGATAGGAGGGTGTTGATTGCTTATGAGGATGAGGCGAAAGATTTGAAGATGAGGGTTGACAAGCTTGAACAAATGGTGAATGCAAACAGAAAGGAGAAGGCTGTTTATGAAGCTGCTATGAAAAAATTAATTCAAACCCGCAAGGCTTTGGCAGAGGCTGAAGCAGCTCATGCCTCTGCATCAAATGCAGTTGTTAGCAAAGAAAAAGAGAAGAGATGGCTGAAGTTTTAG 1491 0.4279 MGSEEEKVLENQLELQLQEQRDSLSAIDQALLSDPTNTELLAVHEELVQAIKDAEEGLLHLKRVRLLQEADSVLHSTNIFAEEEKVEPLGPTDVEPEPLEEKCYSVGSKCRFRHKDGRWYNGQVVQLDNSVAKISFLTPTSENMMMCKFFLQQRCRFGTNCRLSHGIDVQLSSLKKYVPTVWKLSLVGSSIWAVSNSNANAGIWREAELESWDEKAGVGQVVFRDDGSSVKLGAKEMVLSEYAEVNDLESDSSLEQSDSSDYEEEESQGLGFLESTNLQRGIQTETAIFAKWEHHTRGVASKMMFNMGYKEGMGLGVTGQGILNPIPVKVLPPKQSLDHALESHKGEENIEKQRKKRSRGGKRKRDKKFAEAIRVAKEEEESVSDMFTLINNQLAMHGEASNDGSMKKKQNKGSGEDKKVDRRVLIAYEDEAKDLKMRVDKLEQMVNANRKEKAVYEAAMKKLIQTRKALAEAEAAHASASNAVVSKEKEKRWLKF* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02729 496 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Rops11g02729 496 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 496 - -
Rops11g02729 496 Pfam G-patch domain 296 338 IPR000467 GO:0003676
Rops11g02729 496 ProSiteProfiles G-patch domain profile. 296 342 IPR000467 GO:0003676
Rops11g02729 496 MobiDBLite consensus disorder prediction 254 268 - -
Rops11g02729 496 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Rops11g02729 496 MobiDBLite consensus disorder prediction 398 418 - -
Rops11g02729 496 Gene3D - 106 178 - -
Rops11g02729 496 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Rops11g02729 496 MobiDBLite consensus disorder prediction 340 368 - -
Rops11g02729 496 SMART G-patch_5 294 340 IPR000467 GO:0003676
Rops11g02729 496 Coils Coil 425 490 - -
Rops11g02729 496 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Rops11g02729 496 MobiDBLite consensus disorder prediction 247 268 - -
Rops11g02729 496 MobiDBLite consensus disorder prediction 402 418 - -
Rops11g02729 496 MobiDBLite consensus disorder prediction 340 355 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops11g02729 G-patch 1.3e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02729 - - gmx:100794921 754.592