Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02719 ATGGGCAGAGCTCCTTGTTGTTCTAAAGTGGGGTTGCATAGGGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAATATATTCAAGCTCGTGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGGTTGAGATGGGTGAATTATCTTAGACCAGATATAAAGAGAGGTAACATAACTCCTGAAGAAGATGATCTCATAATCAGAATGCATTCACTTCTTGGAAATAGGTGGTCCTTGATAGCAGGAAGATTACCAGGAAGAACAGATAATGAAATAAAGAATTATTGGACCCATCTCAGTAAGAAGCTGAAAAATCAAGGAACAGATGATGAGACAAAAACATGCAATAATCCATCAGATCCTGAACAAGGTACCAAGAAAAAGAAGAATAAAAACAAGAACAAGAAGGACAAGAACAGAGGCAAAAACAATGCAGAGAAAGAAGAGAAGACTAAAGTTTATCTTCCAAAACCAATTAGAGTAAAGGCTTTATCTTTGCCAACAACAGATAGTGGTGCCTCCTTCACCTTTGATTCCAATTCACCTTGTGCATCAACAAACCAAGAAAAGGAACAAAGCCCAGAAACACAAGAAATGACAAACAACATGGGAGAGAATTATGATGATTTTGGAATTTTTGGTGATGACCATGACTTGGTCAACGACAGATTAGCGATGGAATGGCAATCTTATGTTCTCACAGAACATGGCACGTTAGATAAACTCTATGAAGAATACTTGCAGCTCTTGAACGTGGATGATAACCAATATGAATTGGATTCTCATGGAGACATCTTCATTGGAGTGAATCAATAA 852 0.3838 MGRAPCCSKVGLHRGPWTPKEDALLTKYIQARGEGQWKSLPKKAGLLRCGKSCRLRWVNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWTHLSKKLKNQGTDDETKTCNNPSDPEQGTKKKKNKNKNKKDKNRGKNNAEKEEKTKVYLPKPIRVKALSLPTTDSGASFTFDSNSPCASTNQEKEQSPETQEMTNNMGENYDDFGIFGDDHDLVNDRLAMEWQSYVLTEHGTLDKLYEEYLQLLNVDDNQYELDSHGDIFIGVNQ* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02719 283 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops11g02719 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 115 IPR017930 -
Rops11g02719 283 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Rops11g02719 283 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops11g02719 283 CDD SANT 71 108 IPR001005 -
Rops11g02719 283 SMART sant 13 63 IPR001005 -
Rops11g02719 283 SMART sant 66 114 IPR001005 -
Rops11g02719 283 CDD SANT 16 61 IPR001005 -
Rops11g02719 283 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Rops11g02719 283 Gene3D - 14 66 - -
Rops11g02719 283 Coils Coil 140 160 - -
Rops11g02719 283 FunFam Myb transcription factor 11 67 - -
Rops11g02719 283 Gene3D - 71 115 - -
Rops11g02719 283 MobiDBLite consensus disorder prediction 182 207 - -
Rops11g02719 283 MobiDBLite consensus disorder prediction 115 165 - -
Rops11g02719 283 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops11g02719 283 MobiDBLite consensus disorder prediction 151 165 - -
Rops11g02719 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 210 - -
Rops11g02719 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02719 Rops-Chr11 46842184 46843270 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02719 1 115 MYB Transcription Factor Family AT5G49330 75.000 1.77e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops11g02719 Myb_DNA-binding 7.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02719 K09422 - gmx:100101857 373.244