Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops11g02693 ATGGCATCTTCAGATGATGAGGGTGAGACTCAGCCACTAGCTGTGTCAAATTACCATTTTGAAGATGACAAAGATGCACCTGTATCTTTTTCTGTTTTGCCAATTCAATGGAGTGAGTCTGAGAGTCTGGACGGCAAGAAAGAGAAGGTGTTCCTGCATGGTTTTGCGGATAATGGGCTGCAGAAAACTTTCATGCAAGTCATAGCATGGAGGTTTGATCTTTCCTATGTGAAGCCTGAGATATCTGTGCTATCAAAGGATGGGAGATGGGTCAAACTTCTGAAGCCAAGGAAGAGCTATGAGGAGACCATAAGATCTATTTTAATCACCATTCATTTCCTGAATTGTGTGAAGAATAATCCGGACATATCTGCCAAATCTGTGTGGGATAACTTGAGTAAGAACAAGGAGTTTAGCTCTTATGAGGTTATGCCCTCGCAAAATGATTTAATAAACCATATGGCTTTAATGGGTGAAGCTGCCAAACGGGATGCTGTCTTAGCTAAGTCCAAGCTTTTGCTCATGGTTCTGGAAGATAAGGATAAGCTGAGGATTAAGAAACTTTCAGACGAGGAAGTTAAAGATTTAGCACGACCTGGATTTATAGCTGATGACATTGACAATGATATGATTGATGATACTCTTGAAGATTCAGATGAAGAGGATGATGACTTGTTTGATTCTGTTTGTGCGATTTGTGACAATGGTGGCAAACTTTTGTGTTGTGATGGAAAGTGCATGAGGTCATTTCATGCTAATGAGGAGGACGGTGAAGAATCTTCTTGTGTCTCTCTTGGTTTTGACCAGAAGGAAATTGAGGAGATCCAAAACTTCTATTGTAAGAATTGTGAATATAATCGGCACCAGTGCTTTGCATGTGGCACACTAGGCTGTTCTGATAAGTTTGTGGATGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGTGGCTTCTTTTATCATCCACATTGTGTCGCAAAGTTACTTCACCGGGTGGTTGAGGATGCTCCAACAGAACTTGAGAGAAATATAGCTAGGGGGGAACCTTTTACTTGTCCTACCCATTATTGCTGTGTCTGTAAAGAAATGGAAAACAAGAAGGAACACGAATTACAATTTGCTGTTTGTAGGCGTTGTCCCAAGTCATATCATCGCAAATGCTTGCCAAGAAAGATTGCTTTTGAAGACATAGAGGATGAAGGTATTATAACAAGGGCTTGGGAAGGACTTTTACCAAACAATCGCATTCTTATCTACTGCTTAAAGCATGAGATTGATGATGAACTTGGGACTCCTATAAGAGATCATATAAAATTCTCCAATGTTAAAGCTATTGTTCGAGAAATTAATATTGAGGAGAAGACAAAGCCTGCAACCAAAGAAAGAGTTATATTGAACAAGAACAATGTTGAATCAGATAATTTATTTGGCAAAAGAACTAATGCTAAAGTATCTAAACTGACTTGTAAAATGTCTTCTGGGAAAGCTGGTATCAAGAAGTCTGAAAAGGTTTCTGGATCTAACATCTTAAGGAAGAAAGCAAACGAAGCATCAAGGTGTTCGAATGAAAATAAGAGGTCAATATCAAAGGAAACTGAAAGGTCTGACCACAGCGAAAACCATCCCTCATTGGGTGAGAAACTATATGCTTTCATGCAGAAGGGTTCTGAGAAAATTAGTTCTGGCAATCAGGTGGATAATGTAGTTAATAGCACCCTGTCTGTTAAGCCTACTAAAAAGCTGAGTAGTGCATTGCCCCCGTTAGATGCAGATTCAGAGAAAAGATTGTTGGCTTTGTTTAAAGAAGCTTCATCATCAATTACTTTGGAGAATGTCATAAAAGAACATAAATTTGTTTCTACTCATACTCACTCGTTGAAAAATGTTGTGGAGAAGACCATTACAGTGGGGAAGTTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCACTAAGGATGCTGGAGGATGGGCACAACATTCGGGATGCAGAAGCTGTTTGTGGCCCTGATGTTCTAAACCAGATATTTAAGTGGAAGGACAAGTTGAAAGTTTATCTTGCACCTGTTCTAAATGGTAATCGCTACACATCATTTGGTCGTCATTTCACACAAGCGGAAAAGCTGGAAGGGATTGTTGATAAACTCCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTTTGTTGTGGTGCTAATGATTTTAGCATTCTTATGAAGAAAAAGCTTGAAGAGACAGGGAAGAGATGCTCATATAAAAACTATGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCACCGAAAGGAGTTGCCTACAGGGTCAAAATTGATCATGGGCCTCAATCCCCCCTTTGGGCTTAAAGCAACTTTGGCTAACAAGTTTATAGACAAGGCTCTCGAGTTTGAACCGAAGCTCCTGATTCTTATAGTACCACCAGAGACACAGAGGCTGGATAAAAAACGGTCGCCGTATGATCTTGTCTGGGAGAATGAGAAGTTTCTATCAGGCAAATCATTTTATCTACCTGGATCGGTGGATGCTAACGACAGGCAAATAGAACAATGGAACTTAACGCCACCGCCACTCTATCTTTGGAGTCGTCCAGACTGGACTGATAAGCATATAATCATAGCTCAGGAGCATGGTCACCTGTTCAGCCAGCATGAAGTATTGAAAATGGAAAGCTTTAATCATGAAAAATCACCTGTCAGTCTTACTATGGATGATAACTATGGTGATGATCTTGTGTTGGGTCATGATCTCTTGGAGTCAACTGATAATGAAGATCACACATTTATGCATGAAGGACAGAAAGGAAACTTGCCTCATGAAAGTGTTTATCGAGGGAGCCAAGAGAGACATGGATATTGGGTGGACAAGGCTGAGAATACCTCATGGAAGAGGAAACGAACTGAGGGAAGTAATGGAAGAGGATCAGCTGTGACCTCACCAGCCAAAAGGCGGGCTACAAATCAAATGCTCGAGGGAGTACTAGACCATAGTACATCAAATCCAATTGATGAGAGATCCTCAGTTGAAGATTTTCAGCCCAAATCTGATATGATACCTTCGTATTTTGAGGTTGGTGATCGGCATTTGGAGCCCAGCTCTTCCTCACGTATGGAGTTTGGAGTAGCCTATGATGGGACCCAAAAATGGCCCAATGTTGGCAATCCCCTTTCTGACTATGGGACTACAGATGTAGAGGAACACCATATCAGCCCTTTGGGAAACGGCACCAATAGCCTTGGTTATAAACCCTATGTCAGGGATGATGATAAGTACCCAAAGGAATTAGACACACGGCAACAGATTCGCCGTTACGGGCTTCAGAATCCCGATTCTATGAGCAGTCATTATCCATCTGGTTATGATCCTGGTCATAGTCACATGGGATCCAGTTACTTGATACCTGGTTCAGCGATGCAACGATATGCTCCTCGTCTTGACGAATTTAATCATGTCAGGATGGATCCTTTGGGGTCTGAACCTCCAATAATTGGTAGAACTGGCTCTTCTGAACGTGGTGTGCCCCAACCTGGATATGGAAATGGGCTGTCGGGTTTTGCAGCTGGTCCTCACCATTTGTATTCACGTCAGAATTCAGCAGGTTGGTTCAATGAGTAA 3648 0.4142 MASSDDEGETQPLAVSNYHFEDDKDAPVSFSVLPIQWSESESLDGKKEKVFLHGFADNGLQKTFMQVIAWRFDLSYVKPEISVLSKDGRWVKLLKPRKSYEETIRSILITIHFLNCVKNNPDISAKSVWDNLSKNKEFSSYEVMPSQNDLINHMALMGEAAKRDAVLAKSKLLLMVLEDKDKLRIKKLSDEEVKDLARPGFIADDIDNDMIDDTLEDSDEEDDDLFDSVCAICDNGGKLLCCDGKCMRSFHANEEDGEESSCVSLGFDQKEIEEIQNFYCKNCEYNRHQCFACGTLGCSDKFVDAEVFKCASATCGFFYHPHCVAKLLHRVVEDAPTELERNIARGEPFTCPTHYCCVCKEMENKKEHELQFAVCRRCPKSYHRKCLPRKIAFEDIEDEGIITRAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFSNVKAIVREINIEEKTKPATKERVILNKNNVESDNLFGKRTNAKVSKLTCKMSSGKAGIKKSEKVSGSNILRKKANEASRCSNENKRSISKETERSDHSENHPSLGEKLYAFMQKGSEKISSGNQVDNVVNSTLSVKPTKKLSSALPPLDADSEKRLLALFKEASSSITLENVIKEHKFVSTHTHSLKNVVEKTITVGKLEGSVEAVRTALRMLEDGHNIRDAEAVCGPDVLNQIFKWKDKLKVYLAPVLNGNRYTSFGRHFTQAEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLEETGKRCSYKNYDLLPTKNDFNFEMRDWMTVHRKELPTGSKLIMGLNPPFGLKATLANKFIDKALEFEPKLLILIVPPETQRLDKKRSPYDLVWENEKFLSGKSFYLPGSVDANDRQIEQWNLTPPPLYLWSRPDWTDKHIIIAQEHGHLFSQHEVLKMESFNHEKSPVSLTMDDNYGDDLVLGHDLLESTDNEDHTFMHEGQKGNLPHESVYRGSQERHGYWVDKAENTSWKRKRTEGSNGRGSAVTSPAKRRATNQMLEGVLDHSTSNPIDERSSVEDFQPKSDMIPSYFEVGDRHLEPSSSSRMEFGVAYDGTQKWPNVGNPLSDYGTTDVEEHHISPLGNGTNSLGYKPYVRDDDKYPKELDTRQQIRRYGLQNPDSMSSHYPSGYDPGHSHMGSSYLIPGSAMQRYAPRLDEFNHVRMDPLGSEPPIIGRTGSSERGVPQPGYGNGLSGFAAGPHHLYSRQNSAGWFNE* 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops11g02693 1215 CDD PHD2_NSD 289 354 - -
Rops11g02693 1215 MobiDBLite consensus disorder prediction 515 542 - -
Rops11g02693 1215 SUPERFAMILY FYVE/PHD zinc finger 215 291 IPR011011 -
Rops11g02693 1215 MobiDBLite consensus disorder prediction 974 993 - -
Rops11g02693 1215 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 907 - -
Rops11g02693 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 403 IPR013083 -
Rops11g02693 1215 SMART PHD_3 289 355 IPR001965 -
Rops11g02693 1215 SMART PHD_3 229 284 IPR001965 -
Rops11g02693 1215 SMART PHD_3 356 423 IPR001965 -
Rops11g02693 1215 MobiDBLite consensus disorder prediction 498 542 - -
Rops11g02693 1215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 286 IPR013083 -
Rops11g02693 1215 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops11g02693 Rops-Chr11 46432187 46448151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops11g02693 222 330 PHD Transcription Factor Family AT3G14980 30.275 1.92e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops11g02693 - - gmx:100803073 1833.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops11g02693 11 46432187 46448151 Rops9g00283 9 3491188 3498335 PCT